RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 OR4A5Q8NH83 315 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 FAM103A1Q9BTL3 118 aaKnown RBP17.91■□□□□ 0.46
UPF1-207ENST00000599848 WDR13Q9H1Z4 485 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 CNTD2Q9H8S5 307 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 DOK5Q9P104 306 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 HIGD1AQ9Y241 93 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 BCORQ6W2J9 1755 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 S1PR2O95136 353 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 PDCD1Q15116 288 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 PLPPR5Q32ZL2 321 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 OR4P4Q8NGL7 312 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 ABHD14AQ9BUJ0 271 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 SRRQ9GZT4 340 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 WASHC3Q9Y3C0 194 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 AUP1Q9Y679 476 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 CTAG2O75638 210 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 CCL8P80075 99 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 C19orf54Q5BKX5 351 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 RPL36A-HNRNPH2H7BZ11 118 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 DEDDO75618 318 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 MEOX2P50222 304 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 UQCC3Q6UW78 93 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 SCNM1Q9BWG6 230 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 A0A0A6YYJ9 748 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 BMPR1BO00238 502 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 NHLH1Q02575 133 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 NHLH2Q02577 135 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 DCAF12L2Q5VW00 463 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 MOSPD3O75425 235 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 HPRT1P00492 218 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 SELENOTP62341 195 aa17.9■□□□□ 0.46
UPF1-207ENST00000599848 COX5BP10606 129 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 NPY1RP25929 384 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 OR4X1Q8NH49 305 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 ADAMTS17Q8TE56 1095 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 OR2J1Q9GZK6 312 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 UBE2L6O14933 153 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 GYPAP02724 150 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 ADRB1P08588 477 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 RPS4XP62701 263 aaKnown RBP17.89■□□□□ 0.45
UPF1-207ENST00000599848 LINC00303Q3SY05 128 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 SP6Q3SY56 376 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 WFDC3Q8IUB2 231 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 YIPF6Q96EC8 236 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 LAMB1P07942 1786 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 EVPLQ92817 2033 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 LOC105371242A0A075B767 164 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 TO15178 435 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 HTN1P15515 57 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 FOXS1O43638 330 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 P01737 135 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 DNM1P46Q6ZS02 220 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 NTN4Q9HB63 628 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 MSL2Q9HCI7 577 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 NAT8BQ9UHF3 227 aa17.89■□□□□ 0.45
UPF1-207ENST00000599848 TM4SF20Q53R12 229 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 MESTQ5EB52 335 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 CENPVQ7Z7K6 275 aaPredicted RBP17.88■□□□□ 0.45
UPF1-207ENST00000599848 RPS4Y2Q8TD47 263 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 FAM181BA6NEQ2 426 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 OR5AL1P0C617 328 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 TMEM78Q5T7P6 136 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 TSPO2Q5TGU0 170 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 LIPFP07098 398 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 INHBBP09529 407 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 CPN1P15169 458 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 HIST1H1BP16401 226 aaKnown RBP17.88■□□□□ 0.45
UPF1-207ENST00000599848 P2RY1P47900 373 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 MMP16P51512 607 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 NUTF2P61970 127 aaKnown RBP17.88■□□□□ 0.45
UPF1-207ENST00000599848 A0A1B0GU03 582 aa17.88■□□□□ 0.45
UPF1-207ENST00000599848 NPIPB8E9PQR5 432 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 CCKARP32238 428 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 AMMECR1LQ6DCA0 310 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 ZNF66Q6ZN08 573 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 HSD17B13Q7Z5P4 300 aaPredicted RBP17.87■□□□□ 0.45
UPF1-207ENST00000599848 TBC1D26Q86UD7 250 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 OR2V2Q96R30 315 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 KLK11Q9UBX7 282 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 J3QR06 171 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 COL10A1Q03692 680 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 UCN2Q96RP3 112 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 TRAPPC1Q9Y5R8 145 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A10PA6NDY2 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A18PA6NE21 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A16PA6NEW6 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A20PA6NIJ5 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A8PA6NJQ4 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A7PA6NKC0 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A22PA8MWA6 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A12PA8MX19 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A5PA8MXJ8 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A23PA8MXZ1 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 OPN1MWP04001 364 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A15PP0C7V4 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A13PP0C7W8 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A14PP0C7W9 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 FAM90A24PP0C7X0 464 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 OPN1MW2P0DN77 364 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 OPN1MW3P0DN78 364 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms