RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SSX4O60224 188 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 LY6HO94772 140 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 FCER2P06734 321 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 NDUFB7P17568 137 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 P2RX3P56373 397 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 TSPAN5P62079 268 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 EDDM3AQ14507 147 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 TRIM16LQ309B1 348 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 RSBN1Q5VWQ0 802 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-209ENST00000597423 OR52W1Q6IF63 320 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF880Q6PDB4 577 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF782Q6ZMW2 699 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-209ENST00000597423 PLPPR1Q8TBJ4 325 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 LURAP1Q96LR2 239 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 PRRT1Q99946 306 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 C11orf54Q9H0W9 315 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-209ENST00000597423 ING3Q9NXR8 418 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 SLC25A10Q9UBX3 287 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-209ENST00000597423 METRNQ9UJH8 293 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 IGHV4-39P01824 125 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 PMP2P02689 132 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 TFF1P04155 84 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 DNASE1P24855 282 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 GIFP27352 417 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 HRH1P35367 487 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 EDDM3BP56851 147 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 MEF2CQ06413 473 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-209ENST00000597423 CDK10Q15131 360 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 VAX1Q5SQQ9 334 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 CLEC2AQ6UVW9 174 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 ARRDC1Q8N5I2 433 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 FAM216BQ8N7L0 139 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 OR8B3Q8NGG8 313 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 OR4A4PQ8NGN8 299 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 CCDC107Q8WV48 283 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 OR8B2Q96RD0 313 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 GSX2Q9BZM3 304 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 DPAGT1Q9H3H5 408 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 BEX4Q9NWD9 120 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-209ENST00000597423 OPN4Q9UHM6 478 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 KIF25Q9UIL4 384 aa12.7□□□□□ -0.38
TRIM28-209ENST00000597423 CACNA1DQ01668 2161 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 TRGV10A0A0A0MS01 117 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 hADV38S2A0JD32 116 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 ODAMA1E959 279 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 FABP7O15540 132 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 AMY2AP04746 511 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 RBMXP38159 391 aaKnown RBP12.69□□□□□ -0.38
TRIM28-209ENST00000597423 GLIPR1P48060 266 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 NPY4RP50391 375 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 C11orf91Q3C1V1 193 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 AVPI1Q5T686 147 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 OR4C16Q8NGL9 310 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 CHPT1Q8WUD6 406 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 MAFIPQ8WZ33 124 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 SNAPC3Q92966 411 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 NEIL1Q96FI4 390 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-209ENST00000597423 COQ2Q96H96 371 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 SCGB3A2Q96PL1 93 aa12.69□□□□□ -0.38
TRIM28-209ENST00000597423 MBNL3Q9NUK0 354 aaKnown RBP12.69□□□□□ -0.38
TRIM28-209ENST00000597423 CHD3Q12873 2000 aaKnown RBP12.69□□□□□ -0.38
TRIM28-209ENST00000597423 A0A1W2PPH5 198 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 CEACAM18A8MTB9 384 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 M0QYG6 137 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 DVL1O14640 695 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 SPINT2O43291 252 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 NDUFS7O75251 213 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 DIRAS3O95661 229 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 GSTT2P0CG29 244 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 RPS2P15880 293 aaKnown RBP12.68□□□□□ -0.38
TRIM28-209ENST00000597423 SLC6A1P30531 599 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 GLP1RP43220 463 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 SEC61A1P61619 476 aaKnown RBP12.68□□□□□ -0.38
TRIM28-209ENST00000597423 HLA-DRB3P79483 266 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 CR1LQ2VPA4 569 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 PLET1Q6UQ28 207 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 LYPD2Q6UXB3 125 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 OVCH2Q7RTZ1 564 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 DUSP18Q8NEJ0 188 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 OR6F1Q8NGZ6 308 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 FAM168AQ92567 244 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 GALMQ96C23 342 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 SLC25A21Q9BQT8 299 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-209ENST00000597423 PIMREGQ9BSJ6 248 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 TINAGL1Q9GZM7 467 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-209ENST00000597423 EHFQ9NZC4 300 aa12.68□□□□□ -0.38
TRIM28-209ENST00000597423 RAI1Q7Z5J4 1906 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-209ENST00000597423 DSCAMO60469 2012 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 TRBV23-1A0A0A0MS06 115 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 HEXAP06865 529 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 WNT2P09544 360 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 OR5H8P0DN80 308 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 RCC1P18754 421 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-209ENST00000597423 IL2RGP31785 369 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 ECI1P42126 302 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 RFX2P48378 723 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 RPL31P62899 125 aaKnown RBP12.67□□□□□ -0.38
TRIM28-209ENST00000597423 OXA1LQ15070 435 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 CD276Q5ZPR3 534 aa12.67□□□□□ -0.38
TRIM28-209ENST00000597423 NRARPQ7Z6K4 114 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms