RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ZNF273Q14593 569 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 BSXQ3C1V8 233 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 C1orf210Q8IVY1 113 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 ELOA3CA0A087WX78 387 aaPredicted RBP13.4□□□□□ -0.26
CIITA-204ENST00000570546 SERTM2A0A1B0GWG4 89 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 A0A1W2PNV4 684 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 B4DEV8 164 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 PITX3O75364 302 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 TNFRSF1AP19438 455 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 SULT1A2P50226 295 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 FAM78BQ5VT40 261 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 OR5A2Q8NGI9 324 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 A0A1B0GU03 582 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 RRP8O43159 456 aaKnown RBP13.4□□□□□ -0.26
CIITA-204ENST00000570546 LINC00596Q86U02 117 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 SLC45A2Q9UMX9 530 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 SIP14410 1827 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 ATG2BQ96BY7 2078 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 A0A0G2JK05 382 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 A0A0J9YW62 118 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 NDUFB3O43676 98 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 ATP6V0CP27449 155 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 RHOBP62745 196 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 VMA21Q3ZAQ7 101 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 LRRC10Q5BKY1 277 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 FDX2Q6P4F2 183 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 OR4A4PQ8NGN8 299 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 MRGPRFQ96AM1 343 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 PRO1933Q9H354 126 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 Q9N2K0 584 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 PARD6AQ9NPB6 346 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 CLEC1BQ9P126 229 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 VAX2Q9UIW0 290 aa13.4□□□□□ -0.26
CIITA-204ENST00000570546 CDIPTO14735 213 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 EGR4Q05215 589 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 TMEM74BQ9NUR3 256 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 ARL2-SNX15V9GYD0 113 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 J3QT63 122 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 NHLH2Q02577 135 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 TOMM20LQ6UXN7 152 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 ADAMTS17Q8TE56 1095 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 R3HDM4Q96D70 268 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 TIMM9Q9Y5J7 89 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 LHFPL6Q9Y693 200 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 SMIM6P0DI80 62 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 PSG2P11465 335 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 GNG4P50150 75 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 PMS2P11Q13670 270 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 TMEM56Q96MV1 263 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 DUXBA0A1W2PPF3 345 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 PMCHP20382 165 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 OR10AD1Q8NGE0 317 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 DTD1Q8TEA8 209 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 VAMP8Q9BV40 100 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 GPR87Q9BY21 358 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 HES4Q9HCC6 221 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 DOCK3Q8IZD9 2030 aa13.39□□□□□ -0.27
CIITA-204ENST00000570546 A0A0B4J293 547 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 YIF1AO95070 293 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 IGHMP01871 453 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 ADRA2AP08913 450 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 HIST1H3AP68431 136 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 HIKESHIQ53FT3 197 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 OR5D13Q8NGL4 314 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 MAFAQ8NHW3 353 aaPredicted RBP13.38□□□□□ -0.27
CIITA-204ENST00000570546 PRSS50Q9UI38 385 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 ACTL6AO96019 429 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 IGHV3-13P01766 116 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 IGHV3-7P01780 117 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 ZP1P60852 638 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 ANKRD55Q3KP44 614 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 SIRT7Q9NRC8 400 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 OR2A4O95047 310 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 TBX6O95947 436 aaPredicted RBP13.38□□□□□ -0.27
CIITA-204ENST00000570546 P2RY4P51582 365 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 ARL16Q0P5N6 197 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 OR2M7Q8NG81 312 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 OR2A7Q96R45 310 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 GINS3Q9BRX5 216 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 RCC2Q9P258 522 aaKnown RBP13.38□□□□□ -0.27
CIITA-204ENST00000570546 GAPDHP04406 335 aaKnown RBP13.38□□□□□ -0.27
CIITA-204ENST00000570546 CELA2AP08217 269 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 PSG4Q00888 419 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 RPEL1Q2QD12 228 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 GLRX2Q9NS18 164 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 NAT8BQ9UHF3 227 aa13.38□□□□□ -0.27
CIITA-204ENST00000570546 TRAV39A0A0B4J263 110 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 PUSL1Q8N0Z8 303 aaKnown RBP13.37□□□□□ -0.27
CIITA-204ENST00000570546 ANAPC16Q96DE5 110 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 CRYABP02511 175 aaKnown RBP13.37□□□□□ -0.27
CIITA-204ENST00000570546 CD74P04233 296 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 OPRK1P41145 380 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 KLF3P57682 345 aaPredicted RBP13.37□□□□□ -0.27
CIITA-204ENST00000570546 TMEM255AQ5JRV8 349 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 MYOZ1Q9NP98 299 aaPredicted RBP13.37□□□□□ -0.27
CIITA-204ENST00000570546 CKAP5Q14008 2032 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 FAM74A7A6NL05 159 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 HKR1P10072 659 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 FAM74A3Q4VXF1 159 aa13.37□□□□□ -0.27
CIITA-204ENST00000570546 SH2D2AQ9NP31 389 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms