RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 IGKV1D-13A0A0B4J2D9 117 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 SSSCA1O60232 199 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 C1QL1O75973 258 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 F10P00742 488 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 IGKV1-13P0DP09 117 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 NOVA1P51513 510 aaKnown RBP11.54□□□□□ -0.56
SHMT2-222ENST00000555774 IL24Q13007 206 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 HABP2Q14520 560 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-222ENST00000555774 CLINT1Q14677 625 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 OR1C1Q15619 314 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 DPPA3Q6W0C5 159 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 BATF2Q8N1L9 274 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF561Q8N587 486 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 SUMF2Q8NBJ7 301 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 OR2G3Q8NGZ4 309 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 SFT2D1Q8WV19 159 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 CABLES2Q9BTV7 478 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 HIPK2Q9H2X6 1198 aa11.54□□□□□ -0.56
SHMT2-222ENST00000555774 UNKLQ9H9P5 680 aaKnown RBP11.54□□□□□ -0.56
SHMT2-222ENST00000555774 TNRC6AQ8NDV7 1962 aaKnown RBP11.54□□□□□ -0.56
SHMT2-222ENST00000555774 IGKV1-6A0A0C4DH72 117 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 SNRNP70P08621 437 aaKnown RBP11.53□□□□□ -0.56
SHMT2-222ENST00000555774 CELA3AP09093 270 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 CEACAM1P13688 526 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 GNG3P63215 75 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 C9orf135Q5VTT2 229 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 TCEAL6Q6IPX3 200 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 IL22RA1Q8N6P7 574 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 HS3ST6Q96QI5 342 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 CCL28Q9NRJ3 127 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF503-AS2A6NEH8 195 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 C9orf172C9J069 976 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 NPIPB11E5RHQ5 1161 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 PROB1E7EW31 1015 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 M0R036 132 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 HSD17B6O14756 317 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 DEGS1O15121 323 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 PGLYRP1O75594 196 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-222ENST00000555774 HLA-DRB3P79483 266 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 ZXDAP98168 799 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 TSC22D1Q15714 1073 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 SUMF1Q8NBK3 374 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 PLPPR1Q8TBJ4 325 aa11.53□□□□□ -0.56
SHMT2-222ENST00000555774 ZNF552Q9H707 407 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-222ENST00000555774 WRBO00258 174 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 SYNGR1O43759 233 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 CCL2P13500 99 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 F2RP25116 425 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 APLNRP35414 380 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 PPP1CCP36873 323 aaKnown RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 MAGEA5P43359 124 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 AKIRIN2Q53H80 203 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 CXorf66Q5JRM2 361 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 PCSK4Q6UW60 755 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 ETV3LQ6ZN32 361 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 MCEMP1Q8IX19 187 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 TMEM251Q8N6I4 163 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 OR5C1Q8NGR4 320 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 C2CD4CQ8TF44 421 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 NANOS1Q8WY41 292 aaKnown RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 C12orf57Q99622 126 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 KIAA1456Q9P272 454 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 IL36RNQ9UBH0 155 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 FBXO7Q9Y3I1 522 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 OR2W1Q9Y3N9 320 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 PRUNE2Q8WUY3 3088 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 A0A1B0GU03 582 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 FAM166BA8MTA8 275 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 J3QW42 95 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 NGFP01138 241 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 AGAP20933 346 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 MDH2P40926 338 aaKnown RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 FOXG1P55316 489 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 S100A12P80511 92 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 PLGLB1Q02325 96 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 CDCP2Q5VXM1 449 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 ZNF324BQ6AW86 544 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 MOB1BQ7L9L4 216 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 H1FOOQ8IZA3 346 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-222ENST00000555774 FAM58AQ8N1B3 248 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 TMEM171Q8WVE6 324 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 MALSU1Q96EH3 234 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 GLRX2Q9NS18 164 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 KMT2EQ8IZD2 1858 aa11.52□□□□□ -0.57
SHMT2-222ENST00000555774 MYO15AQ9UKN7 3530 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 DFFBO76075 338 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 MAS1LP35410 378 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 MEOX2P50222 304 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 DYNLT3P51808 116 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 TMEM164Q5U3C3 297 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 ZFP82Q8N141 532 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 OR10J5Q8NHC4 309 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 ATP5SQ99766 215 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 TREM2Q9NZC2 230 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 SDK2Q58EX2 2172 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 TRAV24A0A0B4J272 114 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 RBFOX3A6NFN3 312 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 J3QT63 122 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 HBE1P02100 147 aa11.51□□□□□ -0.57
SHMT2-222ENST00000555774 ASCL1P50553 236 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms