RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PAX8Q06710 450 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 ARL6IP1Q15041 203 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 OLFML2AQ68BL7 652 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 FAHD2BQ6P2I3 314 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-209ENST00000553949 TRAPPC6BQ86SZ2 158 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 IZUMO1Q8IYV9 350 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 DTX3Q8N9I9 347 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 MRPL30Q8TCC3 161 aaKnown RBP10.08□□□□□ -0.8
SHMT2-209ENST00000553949 CORO2AQ92828 525 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 FAHD2AQ96GK7 314 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 C6orf62Q9GZU0 229 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-209ENST00000553949 OR6C3Q9NZP0 311 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 ONECUT1Q9UBC0 465 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 KCNS2Q9ULS6 477 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 UBE2J1Q9Y385 318 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-209ENST00000553949 LINC00312Q9Y6C7 94 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 ABCA2Q9BZC7 2435 aa10.08□□□□□ -0.8
SHMT2-209ENST00000553949 ZANQ9Y493 2812 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 TRAV18A0A075B6X5 111 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 TRAV39A0A0B4J263 110 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 FAM25AB3EWG3 89 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 FAM25CB3EWG5 89 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 FAM25GB3EWG6 89 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 J3QLI3 93 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 RGS5O15539 181 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 XRCC3O43542 346 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 NAPSAO96009 420 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 GSTP1P09211 210 aaKnown RBP10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF728P0DKX0 622 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 CCL3L1P16619 93 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 DLX6P56179 175 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ARF6P62330 175 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF260Q3ZCT1 412 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 CDNFQ49AH0 187 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 TMEM69Q5SWH9 247 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 CLEC9AQ6UXN8 241 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 LAX1Q8IWV1 398 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 KIR3DL3Q8N743 410 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF565Q8N9K5 539 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 OR13A1Q8NGR1 328 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 OR4K15Q8NH41 348 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 CCDC107Q8WV48 283 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF714Q96N38 554 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 MIXL1Q9H2W2 232 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 MMP27Q9H306 513 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 RIMS4Q9H426 269 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-209ENST00000553949 GSX1Q9H4S2 264 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-209ENST00000553949 C7orf69Q9H7B7 122 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.07□□□□□ -0.8
SHMT2-209ENST00000553949 YAE1D1Q9NRH1 226 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ADAM30Q9UKF2 790 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 TRAPPC2LQ9UL33 140 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 KPTNQ9Y664 436 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 A3GALT2U3KPV4 340 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 HIVEP1P15822 2718 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 ACANP16112 2415 aa10.07□□□□□ -0.8
SHMT2-209ENST00000553949 TMEM235A6NFC5 223 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 A8MV72 311 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-209ENST00000553949 M0R1W7 72 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 CD3GP09693 182 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 GLP1RP43220 463 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 TAS2R20P59543 309 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 MRPS15P82914 257 aaKnown RBP10.06□□□□□ -0.8
SHMT2-209ENST00000553949 ARFRP1Q13795 201 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 CR1LQ2VPA4 569 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 METTL11BQ5VVY1 283 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 HACD4Q5VWC8 232 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 MRGPRDQ8TDS7 321 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 WDFY2Q96P53 400 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 CMSS1Q9BQ75 279 aaKnown RBP10.06□□□□□ -0.8
SHMT2-209ENST00000553949 HDHD3Q9BSH5 251 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-209ENST00000553949 TMPRSS13Q9BYE2 586 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 SIRPDQ9H106 197 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 AUNIPQ9H7T9 357 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 CHMP1AQ9HD42 196 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-209ENST00000553949 C12orf4Q9NQ89 552 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 TAS2R3Q9NYW6 316 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 EXTL2Q9UBQ6 330 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 OPN4Q9UHM6 478 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 ELF5Q9UKW6 265 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-209ENST00000553949 AUP1Q9Y679 476 aa10.06□□□□□ -0.8
SHMT2-209ENST00000553949 TRBV6-6A0A0A6YYG2 114 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 KBTBD11-OT1A0A1B0GTJ5 212 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF729A6NN14 1252 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-209ENST00000553949 C17orf98A8MV24 154 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 TOX4O94842 621 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 AVPP01185 164 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 MELTFP08582 738 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 CGB3P0DN86 165 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 CGB7P0DN87 165 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 MMP9P14780 707 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 GZMHP20718 246 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 TALDO1P37837 337 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 MNDAP41218 407 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 GNG2P59768 71 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 PNLIPRP3Q17RR3 467 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 C17orf58Q2M2W7 97 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 CNPY1Q3B7I2 92 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 C6orf183Q5T699 404 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF880Q6PDB4 577 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms