RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 OR2F2O95006 317 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 MPIG6BO95866 241 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 CGB3P0DN86 165 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 CGB7P0DN87 165 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 PF4V1P10720 104 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 PTGFRP43088 359 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 OR3A4PP47883 348 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 MECP2P51608 486 aaKnown RBP6.73□□□□□ -1.33
USP28-215ENST00000545608 ZP1P60852 638 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 SNRPGP62308 76 aaKnown RBP6.73□□□□□ -1.33
USP28-215ENST00000545608 CDK5R1Q15078 307 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 ZIK1Q3SY52 487 aaPredicted RBP6.73□□□□□ -1.33
USP28-215ENST00000545608 KRBOX4Q5JUW0 171 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 SLC25A30Q5SVS4 291 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 SAXO1Q8IYX7 474 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 ACBD7Q8N6N7 88 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 OR4D6Q8NGJ1 314 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 CAPSLQ8WWF8 208 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 LGALS12Q96DT0 336 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 AKR1E2Q96JD6 320 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 C4orf36Q96KX1 117 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 PPIL3Q9H2H8 161 aaKnown RBP6.73□□□□□ -1.33
USP28-215ENST00000545608 ZCCHC4Q9H5U6 513 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 NEK6Q9HC98 313 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 INPP5EQ9NRR6 644 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 RHBDL2Q9NX52 303 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 IMPAD1Q9NX62 359 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 EXOGQ9Y2C4 368 aaKnown RBP6.73□□□□□ -1.33
USP28-215ENST00000545608 MYRFQ9Y2G1 1151 aa6.73□□□□□ -1.33
USP28-215ENST00000545608 TSSC4Q9Y5U2 329 aaPredicted RBP6.73□□□□□ -1.33
USP28-215ENST00000545608 KBTBD11-OT1A0A1B0GTJ5 212 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A18PA6NE21 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A16PA6NEW6 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A20PA6NIJ5 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 ZNF729A6NN14 1252 aaPredicted RBP6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A9PA6NNJ1 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A12PA8MX19 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A5PA8MXJ8 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 E9PI62 339 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 H0YJX3 145 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 K7EIL1 84 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 EI24O14681 340 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 CASQ2O14958 399 aaPredicted RBP6.72□□□□□ -1.33
USP28-215ENST00000545608 IGHV3-7P01780 117 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 ALPLP05186 524 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 CSN2P05814 226 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A15PP0C7V4 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A13PP0C7W8 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A14PP0C7W9 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 FAM90A24PP0C7X0 464 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 TMEM225BP0DP42 221 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 NFYBP25208 207 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 CEACAM3P40198 252 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 ARHGDIBP52566 201 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 PRRX1P54821 245 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 KRTAP10-11P60412 298 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 RBM39Q14498 530 aaKnown RBP6.72□□□□□ -1.33
USP28-215ENST00000545608 ATXN7L3Q14CW9 347 aaPredicted RBP6.72□□□□□ -1.33
USP28-215ENST00000545608 KISS1Q15726 138 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 KIAA2026Q5HYC2 2103 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 C9orf152Q5JTZ5 239 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 MEDAGQ5VYS4 303 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 LHFPL3Q86UP9 236 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 CHST4Q8NCG5 386 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 OR4X2Q8NGF9 303 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 OR13A1Q8NGR1 328 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 PYDC1Q8WXC3 89 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 LEAP2Q969E1 77 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 MISP3Q96FF7 219 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 KIRREL1Q96J84 757 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 ZNF649Q9BS31 505 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 ISG20L2Q9H9L3 353 aaKnown RBP6.72□□□□□ -1.33
USP28-215ENST00000545608 RHOFQ9HBH0 211 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 OR6C3Q9NZP0 311 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 PCDHGB5Q9Y5G0 923 aa6.72□□□□□ -1.33
USP28-215ENST00000545608 MEIKINA0A087WXM9 373 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 TRAV24A0A0B4J272 114 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 WI2-2373I1.2A0A1W2PRP0 233 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 OOSP1A8MZH6 123 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 ZNF701M0R085 212 aaPredicted RBP6.71□□□□□ -1.34
USP28-215ENST00000545608 HSPB6O14558 160 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 SULT1B1O43704 296 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 NOL3O60936 208 aaKnown RBP6.71□□□□□ -1.34
USP28-215ENST00000545608 ZFPL1O95159 310 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 SNRNP70P08621 437 aaKnown RBP6.71□□□□□ -1.34
USP28-215ENST00000545608 HCKP08631 526 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 DBTP11182 482 aaKnown RBP6.71□□□□□ -1.34
USP28-215ENST00000545608 GABRB1P18505 474 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 MNDAP41218 407 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 MTNR1BP49286 362 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 SLC35A2P78381 396 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 DIAPH2-AS1Q14236 149 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 GALEQ14376 348 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 KHDC1LQ5JSQ8 128 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 ZNF691Q5VV52 312 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 ZNF329Q86UD4 541 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 SATL1Q86VE3 508 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 SERPINA12Q8IW75 414 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 OSR2Q8N2R0 312 aa6.71□□□□□ -1.34
USP28-215ENST00000545608 PARP16Q8N5Y8 322 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms