RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 RND1Q92730 232 aa12.16□□□□□ -0.46
VPS33A-209ENST00000544349 SLC5A7Q9GZV3 580 aa12.16□□□□□ -0.46
VPS33A-209ENST00000544349 TMEM100Q9NV29 134 aa12.16□□□□□ -0.46
VPS33A-209ENST00000544349 MED19A0JLT2 244 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A10PA6NDY2 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A18PA6NE21 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A16PA6NEW6 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A20PA6NIJ5 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A8PA6NJQ4 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A7PA6NKC0 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A22PA8MWA6 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A12PA8MX19 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A5PA8MXJ8 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A23PA8MXZ1 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 H0YL77 283 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A15PP0C7V4 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A13PP0C7W8 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A14PP0C7W9 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FAM90A24PP0C7X0 464 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 RCC1P18754 421 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-209ENST00000544349 GCH1P30793 250 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 RBMXP38159 391 aaKnown RBP12.15□□□□□ -0.46
VPS33A-209ENST00000544349 IAH1Q2TAA2 248 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-209ENST00000544349 SPERTQ8NA61 448 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 NARS2Q96I59 477 aaKnown RBP12.15□□□□□ -0.46
VPS33A-209ENST00000544349 HS3ST6Q96QI5 342 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 USB1Q9BQ65 265 aaKnown RBP12.15□□□□□ -0.46
VPS33A-209ENST00000544349 OR2S2Q9NQN1 319 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 DECR2Q9NUI1 292 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 FZR1Q9UM11 496 aa12.15□□□□□ -0.46
VPS33A-209ENST00000544349 MAP1BP46821 2468 aaKnown RBP12.14□□□□□ -0.47
VPS33A-209ENST00000544349 TRGV8A0A0C4DH27 118 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 LRP5LA4QPB2 252 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 PRSS44E7EML9 344 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 C16orf97H3BN30 126 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 TRIM77I1YAP6 450 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 J3QT63 122 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 PDCD6O75340 191 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 CRYAAP02489 173 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 ADCYAP1P18509 176 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 ATF4P18848 351 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-209ENST00000544349 DTYMKP23919 212 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 FXYD4P59646 89 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 SRSF3P84103 164 aaKnown RBP12.14□□□□□ -0.47
VPS33A-209ENST00000544349 OR8G1Q15617 311 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 ST6GALNAC3Q8NDV1 305 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 LRRC46Q96FV0 321 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 C1orf123Q9NWV4 160 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 MEMO1Q9Y316 297 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 MLNRO43193 412 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 TIMM8AO60220 97 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-209ENST00000544349 RHBDL1O75783 438 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 OR7C1O76099 320 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-209ENST00000544349 FAM157CP0CG43 387 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 FUT3P21217 361 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 PIGPP57054 158 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 MST1LQ2TV78 715 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 SP6Q3SY56 376 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 GGNBP1Q5YKI7 109 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 SGPP2Q8IWX5 399 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 SCCPDHQ8NBX0 429 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 NECAP2Q9NVZ3 263 aa12.14□□□□□ -0.47
VPS33A-209ENST00000544349 FAM74A7A6NL05 159 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 HKR1P10072 659 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 PMELP40967 661 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 CA7P43166 264 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 CASP6P55212 293 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 DEFA5Q01523 94 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 ZNF154Q13106 437 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 FAM74A3Q4VXF1 159 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 RPL7L1Q6DKI1 246 aaKnown RBP12.13□□□□□ -0.47
VPS33A-209ENST00000544349 C5orf24Q7Z6I8 188 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 OR4A4PQ8NGN8 299 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 ZNF488Q96MN9 340 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 EDARQ9UNE0 448 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 TMEM210A6NLX4 147 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 DNASE2O00115 360 aaPredicted RBP12.13□□□□□ -0.47
VPS33A-209ENST00000544349 BET1O15155 118 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 OR5AC1P0C628 307 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 ZNF728P0DKX0 622 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 SFTPCP11686 197 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 PRKACAP17612 351 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 GLRXP35754 106 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 NKX6-1P78426 367 aaPredicted RBP12.13□□□□□ -0.47
VPS33A-209ENST00000544349 MSMPQ1L6U9 139 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 PHLDA2Q53GA4 152 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 Q6ZR03 302 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 OR11L1Q8NGX0 322 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 LHFPL5Q8TAF8 219 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 MARC2Q969Z3 335 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 CNTNAP3BQ96NU0 1288 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 CNTNAP3Q9BZ76 1288 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 PLK3Q9H4B4 646 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 IL36RNQ9UBH0 155 aa12.13□□□□□ -0.47
VPS33A-209ENST00000544349 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.12□□□□□ -0.47
VPS33A-209ENST00000544349 ECI1P42126 302 aa12.12□□□□□ -0.47
VPS33A-209ENST00000544349 MPV17LQ2QL34 196 aa12.12□□□□□ -0.47
VPS33A-209ENST00000544349 FAM58AQ8N1B3 248 aa12.12□□□□□ -0.47
VPS33A-209ENST00000544349 RHOFQ9HBH0 211 aa12.12□□□□□ -0.47
VPS33A-209ENST00000544349 GPR31O00270 319 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms