RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 OVCH2Q7RTZ1 564 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 LHFPL1Q86WI0 220 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 MKXQ8IYA7 352 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 ZCCHC24Q8N2G6 241 aaKnown RBP10.08□□□□□ -0.8
CLIP1-208ENST00000537004 DYRK2Q92630 601 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 POM121Q96HA1 1249 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 NARFLQ9H6Q4 476 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 ARFGEF3Q5TH69 2177 aa10.08□□□□□ -0.8
CLIP1-208ENST00000537004 C9orf170A2RU37 121 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 LINC00862A6NCI5 91 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 OR5B21A6NL26 309 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 F8VVB4 439 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 F8VWA3 439 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 OR7C1O76099 320 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FCGR3AP08637 254 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FUT3P21217 361 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 CA6P23280 308 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 DTYMKP23919 212 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 TAS2R31P59538 309 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 IL13RA1P78552 427 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 LGALSLQ3ZCW2 172 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-208ENST00000537004 AADACL3Q5VUY0 350 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 ZNF525Q8N782 197 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 AIFM2Q9BRQ8 373 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 OR2J1Q9GZK6 312 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 MTCH1Q9NZJ7 389 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 ANXA10Q9UJ72 324 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 GPR132Q9UNW8 380 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 NOP16Q9Y3C1 178 aaKnown RBP10.07□□□□□ -0.8
CLIP1-208ENST00000537004 AUP1Q9Y679 476 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 CUBNO60494 3623 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 HIVEP2P31629 2446 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 ABCA2Q9BZC7 2435 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A10PA6NDY2 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A18PA6NE21 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A16PA6NEW6 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A20PA6NIJ5 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A8PA6NJQ4 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A7PA6NKC0 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A22PA8MWA6 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A12PA8MX19 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A5PA8MXJ8 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A23PA8MXZ1 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 TRAPPC2LH3BP13 241 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 BET1O15155 118 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 SYNGR1O43759 233 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 TSC22D2O75157 780 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 LY6G6DO95868 133 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A15PP0C7V4 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A13PP0C7W8 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A14PP0C7W9 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FAM90A24PP0C7X0 464 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 VAMP1P23763 118 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FPR2P25090 351 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 UCP2P55851 309 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FGF12P61328 243 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 ERVS71-1P61550 626 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 GNG3P63215 75 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 LY6G6FQ5SQ64 297 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 HAGHLQ6PII5 290 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-208ENST00000537004 PEG10Q86TG7 708 aaKnown RBP10.07□□□□□ -0.8
CLIP1-208ENST00000537004 ZNF573Q86YE8 665 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 MITD1Q8WV92 249 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 ASB13Q8WXK3 278 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 C5orf66Q9H5L9 145 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 FZR1Q9UM11 496 aa10.07□□□□□ -0.8
CLIP1-208ENST00000537004 IGHV4-30-2A0A087WSY4 118 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 RGS11O94810 467 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 ZNF81P51508 661 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 DHODHQ02127 395 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 BAMBIQ13145 260 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 GRK1Q15835 563 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 NHLRC3Q5JS37 347 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 TOR2AQ5JU69 321 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 CLEC9AQ6UXN8 241 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 TMEM185AQ8NFB2 350 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 NUP37Q8NFH4 326 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 SCGB3A2Q96PL1 93 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 PHB2Q99623 299 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 VRK1Q99986 396 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-208ENST00000537004 ZNF442Q9H7R0 627 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 SLC23A1Q9UHI7 598 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 ABCA1O95477 2261 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 PLSCR5A0PG75 271 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 OR5H14A6NHG9 310 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 DUS4LO95620 317 aaKnown RBP10.06□□□□□ -0.8
CLIP1-208ENST00000537004 RAC2P15153 192 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 PI3P19957 117 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 PMELP40967 661 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 TMEM128Q5BJH2 165 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 LRP11Q86VZ4 500 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 OR5M8Q8NGP6 311 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 OR1J1Q8NGS3 322 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 SLC25A40Q8TBP6 338 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 CASTOR1Q8WTX7 329 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 TMEM230Q96A57 120 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 TMPRSS13Q9BYE2 586 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 REG4Q9BYZ8 158 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 C12orf4Q9NQ89 552 aa10.06□□□□□ -0.8
CLIP1-208ENST00000537004 SURF2Q15527 256 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms