RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TCN2P20062 427 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 DRD1P21728 446 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 ERVFC1-1P60608 527 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 MPV17LQ2QL34 196 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 C1orf189Q5VU69 101 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 NCR3LG1Q68D85 454 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 ZNF880Q6PDB4 577 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 THNSL2Q86YJ6 484 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 KIR2DL5AQ8N109 375 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 TMEM217Q8N7C4 229 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 PINX1Q96BK5 328 aaKnown RBP8.35□□□□□ -1.07
SYNE1-230ENST00000495090 BORCS8Q96FH0 119 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 SNHG12Q9BXW3 62 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 MAGT1Q9H0U3 335 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 ZNF665Q9H7R5 613 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 RPRMQ9NS64 109 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 ZNF581Q9P0T4 197 aa8.35□□□□□ -1.07
SYNE1-230ENST00000495090 LAMA2P24043 3122 aaKnown RBP8.34□□□□□ -1.07
SYNE1-230ENST00000495090 THADAQ6YHU6 1953 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 TCRBV21S2A2A0A5A6 115 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 FAM221AA4D161 298 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 TMEM210A6NLX4 147 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 TMEM250H0YL14 139 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 ATXN7O15265 892 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-230ENST00000495090 KBTBD11O94819 623 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 WNT2P09544 360 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 CRYGSP22914 178 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 APLNRP35414 380 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 PTGDSP41222 190 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 PAX5Q02548 391 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 GAGE1Q13065 139 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 CLN3Q13286 438 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 SNAI3Q3KNW1 292 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 ACTL10Q5JWF8 245 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 Q6ZPA2 131 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 NFAM1Q8NET5 270 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-230ENST00000495090 OR1L3Q8NH93 324 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 SCGB1C1Q8TD33 95 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 DYRK2Q92630 601 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 KLHDC7BQ96G42 594 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 TECTBQ96PL2 329 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 OR5B12Q96R08 314 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 KLRF1Q9NZS2 232 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 GAB2Q9UQC2 676 aa8.34□□□□□ -1.07
SYNE1-230ENST00000495090 IGKV1-12A0A0C4DH73 117 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 A0A1W2PNR3 127 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF705GA8MUZ8 300 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 B4E171 279 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 TUSC2O75896 110 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 HRASP01112 189 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 IGKV1D-12P01611 117 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 CASP6P55212 293 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 CLDN17P56750 224 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 RBM11P57052 281 aaKnown RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 SHHQ15465 462 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF726P1Q15940 193 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 TMEM241Q24JQ0 296 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 PIGYQ3MUY2 71 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 DCAF10Q5QP82 559 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 C1orf194Q5T5A4 169 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 SLC25A24Q6NUK1 477 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF66Q6ZN08 573 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 C16orf82Q7Z2V1 217 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 GPR137CQ8N3F9 429 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 CISD2Q8N5K1 135 aaKnown RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 OR2M3Q8NG83 312 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 ANAPC16Q96DE5 110 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 BTF3L4Q96K17 158 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 REPIN1Q9BWE0 567 aaKnown RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 SLC7A10Q9NS82 523 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 TAAR3PQ9P1P4 343 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 PRSS50Q9UI38 385 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 LAMP3Q9UQV4 416 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 ST3GAL6Q9Y274 331 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 H7BYZ3 331 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 OR2J2O76002 312 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 CTXN2P0C2S0 81 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 SRP14P37108 136 aaKnown RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 MDH2P40926 338 aaKnown RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 GALR1P47211 349 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 TDGF1P3P51864 188 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 FUT6P51993 359 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 BSXQ3C1V8 233 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 TMEM41BQ5BJD5 291 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 C16orf47Q6ZP98 133 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF818PQ6ZRF7 136 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 C20orf196Q8IYI0 205 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 PRSS58Q8IYP2 241 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 NAXEQ8NCW5 288 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 Q8NFD4 153 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 SMIM7Q9BQ49 75 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 PLEK2Q9NYT0 353 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 SEMA5BQ9P283 1151 aa8.33□□□□□ -1.08
SYNE1-230ENST00000495090 RP1P56715 2156 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 CHD7Q9P2D1 2997 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 A0A1W2PPC4 97 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 A6NJY4 79 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 MARCH11A6NNE9 402 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 CEBPZOSA8MTT3 80 aa8.32□□□□□ -1.08
SYNE1-230ENST00000495090 DHHO43323 396 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms