RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 CD1AP06126 327 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 FAM157CP0CG43 387 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 CD99P14209 185 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 RPL7P18124 248 aaKnown RBP6.84□□□□□ -1.31
NEDD9-204ENST00000448183 CXCL2P19875 107 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 KLF3P57682 345 aaPredicted RBP6.84□□□□□ -1.31
NEDD9-204ENST00000448183 TNFAIP6P98066 277 aaPredicted RBP6.84□□□□□ -1.31
NEDD9-204ENST00000448183 ZAR1Q86SH2 424 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 SSMEM1Q8WWF3 244 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 TM4SF19Q96DZ7 209 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 VSIG4Q9Y279 399 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 SPTA1P02549 2419 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 TOGARAM1Q9Y4F4 1720 aa6.84□□□□□ -1.31
NEDD9-204ENST00000448183 KIAA1551Q9HCM1 1747 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 A6NDN8 102 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 C3orf80F5H4A9 247 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 CA11O75493 328 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 MELTFP08582 738 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 COL8A1P27658 744 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 HOXA6P31267 233 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 PRRX1P54821 245 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 MGAT2Q10469 447 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 RIGQ13278 110 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 EIF3IQ13347 325 aaKnown RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 TMEM255AQ5JRV8 349 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 FDX2Q6P4F2 183 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 TDHQ8IZJ6 230 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 MRGPRFQ96AM1 343 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 FZR1Q9UM11 496 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 PAM16Q9Y3D7 125 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 OR2W1Q9Y3N9 320 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 TUBGCP6Q96RT7 1819 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 HELTA6NFD8 242 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ZNF716A6NP11 495 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 CORTO00230 105 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 GAPDHP04406 335 aaKnown RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 STAG3L2P0CL84 134 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 GZMHP20718 246 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 PMELP40967 661 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 IER3P46695 156 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ZBTB34Q8NCN2 500 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 GRAMD2BQ96HH9 432 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ONECUT1Q9UBC0 465 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 J3QT63 122 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 SMPD2O60906 423 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 LYZL6O75951 148 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ZNF205O95201 554 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 IGHV3-13P01766 116 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 IGHV3-7P01780 117 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 G6PCP35575 357 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 FAM3BP58499 235 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ABLIM2Q6H8Q1 611 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 H1FOOQ8IZA3 346 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 OR1B1Q8NGR6 318 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 RGP1Q92546 391 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 RASL10BQ96S79 203 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ABHD14AQ9BUJ0 271 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 CHST5Q9GZS9 411 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 IL17BQ9UHF5 180 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 SIRT4Q9Y6E7 314 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 CYR61O00622 381 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 F12P00748 615 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 BGLAPP02818 100 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 VSIG10L2P0DP72 767 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 MUC1P15941 1255 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 CEACAM3P40198 252 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 SSPNQ14714 243 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 GUCA2BQ16661 112 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 GFRALQ6UXV0 394 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 D2HGDHQ8N465 521 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 EIF4E3Q8N5X7 224 aaKnown RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 OR52L2PQ8NGH6 319 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 ARRDC1-AS1Q9H2J1 176 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 AMMECR1Q9Y4X0 333 aaPredicted RBP6.83□□□□□ -1.32
NEDD9-204ENST00000448183 CABIN1Q9Y6J0 2220 aa6.83□□□□□ -1.32
NEDD9-204ENST00000448183 SUCLG1P53597 346 aaKnown RBP6.82□□□□□ -1.32
NEDD9-204ENST00000448183 HFEQ30201 348 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 DCAF12L2Q5VW00 463 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 SCGB1D4Q6XE38 83 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 PUSL1Q8N0Z8 303 aaKnown RBP6.82□□□□□ -1.32
NEDD9-204ENST00000448183 VN1R17PQ8TDU5 208 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 CCL17Q92583 94 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 MBD1Q9UIS9 605 aaPredicted RBP6.82□□□□□ -1.32
NEDD9-204ENST00000448183 CES1P1Q9UKY3 287 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 HSF4Q9ULV5 492 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 CEP290O15078 2479 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 K7ESF4 209 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 ISLRO14498 428 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 PTP4A3O75365 173 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 CXorf1O96002 111 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 HLA-DQB1P01920 261 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 BCL2P10415 239 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 RCC1P18754 421 aaPredicted RBP6.82□□□□□ -1.32
NEDD9-204ENST00000448183 TMEM50BP56557 158 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 SERF2P84101 59 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 GGTLC2Q14390 218 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 ZNF343Q6P1L6 599 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 TMEM108Q6UXF1 575 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 FAM219AQ8IW50 185 aa6.82□□□□□ -1.32
NEDD9-204ENST00000448183 STXBP6Q8NFX7 210 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms