RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CYB561P49447 251 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 GFRA1P56159 465 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 CLN3Q13286 438 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 DAZAP2Q15038 168 aaPredicted RBP9.71□□□□□ -0.86
USP4-205ENST00000431357 ACER2Q5QJU3 275 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.71□□□□□ -0.86
USP4-205ENST00000431357 DMRTC2Q8IXT2 367 aaPredicted RBP9.71□□□□□ -0.86
USP4-205ENST00000431357 MKXQ8IYA7 352 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 TMEM252Q8N6L7 170 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 SUMF2Q8NBJ7 301 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 CPEB3Q8NE35 698 aaKnown RBP9.71□□□□□ -0.86
USP4-205ENST00000431357 IP6K3Q96PC2 410 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 PLK3Q9H4B4 646 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 FBXO7Q9Y3I1 522 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 TNRC6BQ9UPQ9 1833 aaKnown RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 IGSF23A1L1A6 192 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ZNF732B4DXR9 585 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 CER1O95813 267 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 SERPINA7P05543 415 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ZNF14P17017 642 aaPredicted RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 BCL3P20749 454 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ATP6V0CP27449 155 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 S100GP29377 79 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 OTX2P32243 289 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 SULT1A1P50225 295 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ID3Q02535 119 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 PRDX4Q13162 271 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 CEACAM21Q3KPI0 293 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 SOHLH1Q5JUK2 328 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 KRBOX4Q5JUW0 171 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 PEAR1Q5VY43 1037 aaPredicted RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 LINC00596Q86U02 117 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ZDHHC23Q8IYP9 409 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 CMTM1Q8IZ96 169 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 OR56B2PQ8NGI1 322 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 CD300LFQ8TDQ1 290 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ABHD3Q8WU67 409 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 TCFL5Q9UL49 500 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 BOKQ9UMX3 212 aaPredicted RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 RBFOX3A6NFN3 312 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 SLC22A20A6NK97 555 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 TRAPPC2LH3BP13 241 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ADAM20O43506 726 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 CEACAM1P13688 526 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 PPP1CCP36873 323 aaKnown RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 CEACAM6P40199 344 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ARF1P84077 181 aaKnown RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 Q0VFX4 171 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 AARDQ4LEZ3 155 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 NMSQ5H8A3 153 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 DPPA3Q6W0C5 159 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ZNF818PQ6ZRF7 136 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 MRPL21Q7Z2W9 205 aaKnown RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 UBALD2Q8IYN6 164 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 GAPTQ8N292 157 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 OR5D13Q8NGL4 314 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 SLAMF9Q96A28 289 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 APOBEC3DQ96AK3 386 aaPredicted RBP9.7□□□□□ -0.86
USP4-205ENST00000431357 KIAA1456Q9P272 454 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 ATP23Q9Y6H3 246 aa9.7□□□□□ -0.86
USP4-205ENST00000431357 PI4KAP42356 2102 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 A0A1W2PPH5 198 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 A6NLC8 198 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 ZNF724A8MTY0 619 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 H0Y980 276 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 PTBP3O95758 552 aaKnown RBP9.69□□□□□ -0.86
USP4-205ENST00000431357 MBP02144 154 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 NDUFB7P17568 137 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 OR8G1Q15617 311 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 C9orf152Q5JTZ5 239 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 SAPCD1Q5SSQ6 148 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 DCAF12Q5T6F0 453 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 IL22RA1Q8N6P7 574 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 OR5A2Q8NGI9 324 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 ZNF845Q96IR2 970 aaPredicted RBP9.69□□□□□ -0.86
USP4-205ENST00000431357 HIST1H2AAQ96QV6 131 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 HIPK2Q9H2X6 1198 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 DEPPQ9NTK1 212 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 GFOD1Q9NXC2 390 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 RTTNQ86VV8 2226 aa9.69□□□□□ -0.86
USP4-205ENST00000431357 TRBV6-6A0A0A6YYG2 114 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 PROB1E7EW31 1015 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 SSSCA1O60232 199 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 IFNA17P01571 189 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 HBE1P02100 147 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 SCTP09683 121 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 OR13C7P0DN81 318 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 SLC25A6P12236 298 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 NOVA1P51513 510 aaKnown RBP9.68□□□□□ -0.86
USP4-205ENST00000431357 IL24Q13007 206 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 HNF4GQ14541 408 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 HIKESHIQ53FT3 197 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 C1QL4Q86Z23 238 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 OR5C1Q8NGR4 320 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 SIGLEC12Q96PQ1 595 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 C20orf24Q9BUV8 137 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 WNT2P09544 360 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 GPM6AP51674 278 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 DYNLT3P51808 116 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 CXorf66Q5JRM2 361 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms