RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TMEM56-RWDD3S4R434 201 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 HSD17B6O14756 317 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 SNAPINO95295 136 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 OR8U9P0C7N5 309 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF766Q5HY98 468 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 LINC00596Q86U02 117 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 SUMF1Q8NBK3 374 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 OR8U1Q8NH10 309 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF175Q9Y473 711 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 SLC34A2O95436 690 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 CD80P33681 288 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 IGFBP7Q16270 282 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 CBLN2Q8IUK8 224 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 MRPL30Q8TCC3 161 aaKnown RBP18.59■□□□□ 0.57
SHMT1-202ENST00000352886 TMEM9BQ9NQ34 198 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 CCL28Q9NRJ3 127 aa18.59■□□□□ 0.57
SHMT1-202ENST00000352886 RHBDL1O75783 438 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 CD5P06127 495 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 CTXN2P0C2S0 81 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 SFTA3P0C7M3 94 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 SEC11BP0C7V7 166 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 NPBWR1P48145 328 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 IL24Q13007 206 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 TMPRSS7Q7RTY8 843 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 SELENOHQ8IZQ5 122 aaKnown RBP18.58■□□□□ 0.57
SHMT1-202ENST00000352886 FAM58AQ8N1B3 248 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 GINS3Q9BRX5 216 aa18.58■□□□□ 0.57
SHMT1-202ENST00000352886 TRAV24A0A0B4J272 114 aa18.58■□□□□ 0.56
SHMT1-202ENST00000352886 LYPD6BQ8NI32 183 aa18.58■□□□□ 0.56
SHMT1-202ENST00000352886 RIMS4Q9H426 269 aaPredicted RBP18.58■□□□□ 0.56
SHMT1-202ENST00000352886 SPP1P10451 314 aa18.57■□□□□ 0.56
SHMT1-202ENST00000352886 NKX2-1P43699 371 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-202ENST00000352886 GTF3AQ92664 365 aaKnown RBP18.57■□□□□ 0.56
SHMT1-202ENST00000352886 BOD1Q96IK1 185 aa18.57■□□□□ 0.56
SHMT1-202ENST00000352886 POLR2GP62487 172 aaKnown RBP eCLIP18.57■□□□□ 0.56
SHMT1-202ENST00000352886 PCSK4Q6UW60 755 aa18.57■□□□□ 0.56
SHMT1-202ENST00000352886 SH3BGRL3Q9H299 93 aa18.57■□□□□ 0.56
SHMT1-202ENST00000352886 OR51I2Q9H344 312 aa18.57■□□□□ 0.56
SHMT1-202ENST00000352886 C9JQL5 133 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 ADAM20O43506 726 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 DANCRP0C864 163 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 ASCL1P50553 236 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 EWSR1Q01844 656 aaKnown RBP eCLIP18.56■□□□□ 0.56
SHMT1-202ENST00000352886 MYPOPQ86VE0 399 aaPredicted RBP18.56■□□□□ 0.56
SHMT1-202ENST00000352886 OR2C3Q8N628 320 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 HSD17B11Q8NBQ5 300 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 SPIN2AQ99865 258 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 SPIN2BQ9BPZ2 258 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 PKIBQ9C010 78 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 GP6Q9HCN6 339 aa18.56■□□□□ 0.56
SHMT1-202ENST00000352886 TNFSF12O43508 249 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 ZNF806P0C7X5 589 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 DVL1P1P54792 670 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-202ENST00000352886 PMP22Q01453 160 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 ZNF616Q08AN1 781 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 TBC1D28Q2M2D7 210 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 MIDNQ504T8 468 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 CMTM1Q8IZ96 169 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 TMEM178AQ8NBL3 297 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 C11orf1Q9H5F2 150 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 ZDHHC11Q9H8X9 412 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 A0A1W2PR80 420 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 FAM24AA6NFZ4 105 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 FAM76BQ5HYJ3 339 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 DHRS7BQ6IAN0 325 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-202ENST00000352886 DLL3Q9NYJ7 618 aa18.55■□□□□ 0.56
SHMT1-202ENST00000352886 TSPAN15O95858 294 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 CELA3BP08861 270 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 ZNF44P15621 663 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 UCP1P25874 307 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 FHITP49789 147 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 KIRREL1Q96J84 757 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 LOC400499M0QZD8 3231 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 TRBV6-6A0A0A6YYG2 114 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 J3QT63 122 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 CXorf66Q5JRM2 361 aaPredicted RBP18.54■□□□□ 0.56
SHMT1-202ENST00000352886 P4HA3Q7Z4N8 544 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 MAGT1Q9H0U3 335 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 LUZP4Q9P127 313 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 PRELID3BQ9Y3B1 194 aa18.54■□□□□ 0.56
SHMT1-202ENST00000352886 FAM157AC9JC47 383 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 SSSCA1O60232 199 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 C1QL1O75973 258 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 H2AFB1P0C5Y9 115 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 PVALBP20472 110 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-202ENST00000352886 CAMLGP49069 296 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 HLA-DRB3P79483 266 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 NMSQ5H8A3 153 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 OR10J5Q8NHC4 309 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 KLF2Q9Y5W3 355 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-202ENST00000352886 IGSF23A1L1A6 192 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 DEGS1O15121 323 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 PGLYRP1O75594 196 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-202ENST00000352886 ZNF14P17017 642 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-202ENST00000352886 VDAC1P21796 283 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 SAV1Q9H4B6 383 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-202ENST00000352886 IFT22Q9H7X7 185 aa18.53■□□□□ 0.56
SHMT1-202ENST00000352886 PRH1P02810 166 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 CLINT1Q14677 625 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 TRIP6Q15654 476 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms