RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ZPBPQ9BS86 351 aa8.66□□□□□ -1.02
LIG3-201ENST00000262327 LRFN3Q9BTN0 628 aa8.66□□□□□ -1.02
LIG3-201ENST00000262327 SLC7A10Q9NS82 523 aa8.66□□□□□ -1.02
LIG3-201ENST00000262327 SLC7A11Q9UPY5 501 aa8.66□□□□□ -1.02
LIG3-201ENST00000262327 IGHV1-45A0A0A0MS14 117 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 LOC102725191A0A1B0GVB3 256 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ZNF724A8MTY0 619 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 PPYP01298 95 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 SCTP09683 121 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 HIST1H1BP16401 226 aaKnown RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 EPHA1P21709 976 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ATP6V0CP27449 155 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 NBL1P41271 181 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 GLP1RP43220 463 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 RAB5CP51148 216 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 SSR4P51571 173 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 DSCR4P56555 118 aaPredicted RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 MALLQ13021 153 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 HNF4GQ14541 408 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 AAED1Q7RTV5 226 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 RPS19BP1Q86WX3 136 aaKnown RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 GPR137CQ8N3F9 429 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ZNF611Q8N823 705 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ABHD3Q8WU67 409 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 TMEM171Q8WVE6 324 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 SPSB1Q96BD6 273 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 GINS3Q9BRX5 216 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 COL25A1Q9BXS0 654 aaPredicted RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 OR51B6Q9H340 312 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 BCO1Q9HAY6 547 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 DECR2Q9NUI1 292 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 HS3ST3B1Q9Y662 390 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 KNTC1P50748 2209 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 C3orf85A0A1B0GTC6 90 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 H0YL77 283 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ADAM20O43506 726 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 SNRPCP09234 159 aaKnown RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 COX6A1P12074 109 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 TCN2P20062 427 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 RAB4AP20338 218 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 PAX6P26367 422 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 RPS10P46783 165 aaKnown RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 CARD18P57730 90 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 MRPS34P82930 218 aaKnown RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 SRYQ05066 204 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 RAB35Q15286 201 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ZNF239Q16600 458 aaKnown RBP8.65□□□□□ -1.02
LIG3-201ENST00000262327 SOHLH1Q5JUK2 328 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 PIP4P1Q86T03 277 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 TBC1D26Q86UD7 250 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 OR2C3Q8N628 320 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 GALNT14Q96FL9 552 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 SLC35B3Q9H1N7 401 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 WDR54Q9H977 334 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 TMEM38BQ9NVV0 291 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 LIPGQ9Y5X9 500 aa8.65□□□□□ -1.02
LIG3-201ENST00000262327 ZNF318Q5VUA4 2279 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 IFITM10A6NMD0 228 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 GNRHRP30968 328 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 ECI1P42126 302 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 TLE1Q04724 770 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 RTL6Q6ICC9 239 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 ZNF695Q8IW36 515 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 SUMF2Q8NBJ7 301 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 OR5C1Q8NGR4 320 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 UBALD1Q8TB05 177 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 BOD1Q96IK1 185 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 SYT3Q9BQG1 590 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 ARV1Q9H2C2 271 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 PARD6AQ9NPB6 346 aa8.65□□□□□ -1.03
LIG3-201ENST00000262327 COL27A1Q8IZC6 1860 aaPredicted RBP8.64□□□□□ -1.03
LIG3-201ENST00000262327 IGKV1D-13A0A0B4J2D9 117 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 MPPED1O15442 326 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 PDCD6O75340 191 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 OR2C1O95371 312 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 IFNA10P01566 189 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 IGKV1-13P0DP09 117 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 BCL3P20749 454 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 DTYMKP23919 212 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 NKX2-1P43699 371 aaPredicted RBP8.64□□□□□ -1.03
LIG3-201ENST00000262327 RAC1P63000 192 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 DAZAP2Q15038 168 aaPredicted RBP8.64□□□□□ -1.03
LIG3-201ENST00000262327 ZNF818PQ6ZRF7 136 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 GAPTQ8N292 157 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 MOB3AQ96BX8 217 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 ZNF488Q96MN9 340 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 FOXB1Q99853 325 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 ANGPTL4Q9BY76 406 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 GLRX2Q9NS18 164 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 HSF4Q9ULV5 492 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 POMT1Q9Y6A1 747 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 KIAA2026Q5HYC2 2103 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 TRAV39A0A0B4J263 110 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 CA11O75493 328 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 KLF7O75840 302 aaPredicted RBP8.64□□□□□ -1.03
LIG3-201ENST00000262327 VAMP5O95183 116 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 TMEM50AO95807 157 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 S100A2P29034 98 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 DYNLT3P51808 116 aa8.64□□□□□ -1.03
LIG3-201ENST00000262327 FOXG1P55316 489 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms