RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CHST10O43529 356 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 UGT2B11O75310 529 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 GCM2O75603 506 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TRAPPC6AO75865 159 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MPZL1O95297 269 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 UTS2O95399 124 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 H6PDO95479 791 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 C1orf105O95561 183 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LSM8O95777 96 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 IGKV1D-16P01601 117 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 HLA-DQB1P01920 261 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 FTH1P02794 183 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 IFNA16P05015 189 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SERPINA7P05543 415 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4L2P0CJ85 424 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4L3P0CJ86 424 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4L5P0CJ88 424 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4L6P0CJ89 424 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4L7P0CJ90 424 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 C1GALT1C1LP0DN25 315 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CD37P11049 281 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC2A3P11169 496 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ERGP11308 486 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ATP1B2P14415 290 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 NCF2P19878 526 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CD9P21926 228 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DCKP27707 260 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TEAD1P28347 426 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CMPK1P30085 196 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 AGTR1P30556 359 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RPA3P35244 121 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SSTR5P35346 364 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 HSPA9P38646 679 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SSR2P43308 183 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ERFP50548 548 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CDK9P50750 372 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF83P51522 516 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SSR4P51571 173 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CDKN2DP55273 166 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CLDN18P56856 261 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RAB38P57729 211 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MLF1P58340 268 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 GPX6P59796 221 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SEC61GP60059 68 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 UBE2NP61088 152 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ESRRGP62508 458 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 BTN3A2P78410 334 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DCDP81605 110 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MRPS22P82650 360 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DEFA5Q01523 94 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MYL5Q02045 173 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 BSPH1Q075Z2 132 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TGM3Q08188 693 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PLCXD2Q0VAA5 305 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ART3Q13508 389 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RCAN2Q14206 197 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 EBPQ15125 230 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TMED2Q15363 201 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PPP1R7Q15435 360 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR4D1Q15615 310 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TSNQ15631 228 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 UAP1Q16222 522 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DGUOKQ16854 277 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CLEC12BQ2HXU8 276 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM249Q2WGJ8 235 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ORMDL2Q53FV1 153 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DNLZQ5SXM8 178 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RAET1LQ5VY80 246 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ZFAND6Q6FIF0 208 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PTRHD1Q6GMV3 140 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC25A25Q6KCM7 469 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ZFP1Q6P2D0 407 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CEMP1Q6PRD7 247 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4L9Q6RFH8 374 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 AGTRAPQ6RW13 159 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM205Q6UW68 189 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 C12orf54Q6X4T0 127 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TEX43Q6ZNM6 134 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RGS9BPQ6ZS82 235 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PID1Q7Z2X4 250 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LRP11Q86VZ4 500 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RPS19BP1Q86WX3 136 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PSTKQ8IV42 348 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CDKL3Q8IVW4 592 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PDZD9Q8IXQ8 264 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PDIK1LQ8N165 341 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 BBS5Q8N3I7 341 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 STPG2Q8N412 459 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LINC00471Q8N535 108 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM156Q8N614 296 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PRELID2Q8N945 189 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 EIF1ADQ8N9N8 165 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM104Q8NE00 496 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SDR9C7Q8NEX9 313 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 B3GNT7Q8NFL0 401 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR4F6Q8NGB9 312 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR4K5Q8NGD3 323 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR52E4Q8NGH9 312 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR8U1Q8NH10 309 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR5AK3PQ8NH89 298 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms