RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 SLC25A15Q9Y619 301 aa8.63□□□□□ -1.03
SS18-221ENST00000582448 CADP27708 2225 aa8.63□□□□□ -1.03
SS18-221ENST00000582448 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.63□□□□□ -1.031e-8■■■■□ 23.5
SS18-221ENST00000582448 PQLC2LA1A4F0 135 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 SERPINE3A8MV23 424 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 ZNF736B4DX44 427 aaPredicted RBP8.62□□□□□ -1.03
SS18-221ENST00000582448 TRAPPC2LH3BP13 241 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 RAB27BO00194 218 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 TGFAP01135 160 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 IGLV1-44P01699 117 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 MT-ND4P03905 459 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 CECR9P0C854 216 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 HIST1H1DP16402 221 aaKnown RBP8.62□□□□□ -1.03
SS18-221ENST00000582448 GPM6AP51674 278 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 EFNA4P52798 201 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 SELENOVP59797 346 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 RPS23P62266 143 aaKnown RBP8.62□□□□□ -1.03
SS18-221ENST00000582448 GNG3P63215 75 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 ARFRP1Q13795 201 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 DMRTC1Q5HYR2 192 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 OR2T2Q6IF00 324 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 ASCL4Q6XD76 172 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 TRAPPC6BQ86SZ2 158 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 ZNF554Q86TJ5 538 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 OSR2Q8N2R0 312 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 TMEM104Q8NE00 496 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 OR10K1Q8NGX5 313 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 SLC25A40Q8TBP6 338 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 GPX8Q8TED1 209 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 OR5P3Q8WZ94 311 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 AQP3Q92482 292 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 GCDHQ92947 438 aaPredicted RBP8.62□□□□□ -1.03
SS18-221ENST00000582448 MSI2Q96DH6 328 aaKnown RBP8.62□□□□□ -1.03
SS18-221ENST00000582448 SEH1LQ96EE3 360 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 C1orf147Q96MC9 270 aaPredicted RBP8.62□□□□□ -1.03
SS18-221ENST00000582448 ZNF747Q9BV97 191 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 TM2D1Q9BX74 207 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 OR2J1Q9GZK6 312 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 MMP28Q9H239 520 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 HRASLSQ9HDD0 168 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 SVEP1Q4LDE5 3571 aa8.62□□□□□ -1.03
SS18-221ENST00000582448 FREM1Q5H8C1 2179 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 IGHV2OR16-5A0A0B4J2B6 119 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 IGHV1-18A0A0C4DH31 117 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 MEIOCA2RUB1 952 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 TMEM235A6NFC5 223 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZNF732B4DXR9 585 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 DISC1C4P0D8 188 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 INMT-MINDY4F8WBC2 141 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 TPD52L2O43399 206 aaKnown RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 AKR7A2O43488 359 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 SPRY1O43609 319 aaPredicted RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 ANGPTL7O43827 346 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 TIMM8AO60220 97 aaPredicted RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 HNRNPCP07910 306 aaKnown RBP eCLIP8.61□□□□□ -1.03
SS18-221ENST00000582448 MELTFP08582 738 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 PTHLHP12272 177 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZNF35P13682 527 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 TBPP20226 339 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 CA6P23280 308 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 GABRR1P24046 479 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 PTAFRP25105 342 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 CD40P25942 277 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 GIFP27352 417 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 BLVRBP30043 206 aaPredicted RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 SRP14P37108 136 aaKnown RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 HAAOP46952 286 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 PDLIM4P50479 330 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZP1P60852 638 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 BTG1P62324 171 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 MEF2DQ14814 521 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 OR8G1Q15617 311 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZNF260Q3ZCT1 412 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ACTBL2Q562R1 376 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 OLFML2AQ68BL7 652 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 STEAP1BQ6NZ63 245 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZNF782Q6ZMW2 699 aaPredicted RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 SLC25A26Q70HW3 274 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 AKAP14Q86UN6 197 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 FAM89BQ8N5H3 189 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 SPERTQ8NA61 448 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 TMEM229BQ8NBD8 167 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 KLF14Q8TD94 323 aaPredicted RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 MARVELD1Q9BSK0 173 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ADAT1Q9BUB4 502 aaKnown RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 PLK3Q9H4B4 646 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZMAT4Q9H898 229 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 ZMAT3Q9HA38 289 aaKnown RBP8.61□□□□□ -1.03
SS18-221ENST00000582448 RHOFQ9HBH0 211 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 PLEKHJ1Q9NW61 149 aa8.61□□□□□ -1.03
SS18-221ENST00000582448 IGKV1-27A0A075B6S5 117 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 MEIS3P1A6NDR6 274 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A10PA6NDY2 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A18PA6NE21 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A16PA6NEW6 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A20PA6NIJ5 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A8PA6NJQ4 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A7PA6NKC0 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A22PA8MWA6 464 aa8.6□□□□□ -1.03
SS18-221ENST00000582448 FAM90A12PA8MX19 464 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms