RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CD80P33681 288 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 SERPINF1P36955 418 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 MDH2P40926 338 aaKnown RBP8.85□□□□□ -0.99
SS18-217ENST00000580958 GATA4P43694 442 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 NPY4RP50391 375 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 CD83Q01151 205 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 C11orf91Q3C1V1 193 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 CD276Q5ZPR3 534 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 C5orf24Q7Z6I8 188 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 TERB2Q8NHR7 220 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 PLPPR1Q8TBJ4 325 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 CCDC107Q8WV48 283 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 ITLN2Q8WWU7 325 aaPredicted RBP8.85□□□□□ -0.99
SS18-217ENST00000580958 PIK3IP1Q96FE7 263 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 DMRTB1Q96MA1 342 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 ZNF2Q9BSG1 426 aaPredicted RBP8.85□□□□□ -0.99
SS18-217ENST00000580958 GPN1Q9HCN4 374 aaPredicted RBP8.85□□□□□ -0.99
SS18-217ENST00000580958 RANGRFQ9HD47 186 aaPredicted RBP8.85□□□□□ -0.99
SS18-217ENST00000580958 NECAP2Q9NVZ3 263 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 ING3Q9NXR8 418 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 RASL12Q9NYN1 266 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 ZNF69Q9UC07 566 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 IL19Q9UHD0 177 aa8.85□□□□□ -0.99
SS18-217ENST00000580958 IGHV3OR15-7A0A075B7D8 119 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 TRBV6-6A0A0A6YYG2 114 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 FAM181BA6NEQ2 426 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 OR5H14A6NHG9 310 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 RFPL4AA6NLU0 287 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 C17orf100A8MU93 164 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 SNRPGP15A8MWD9 76 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 DEFB108AA8MXU0 73 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 RFPL4AL1F8VTS6 287 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 M0R233 179 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 F12P00748 615 aaPredicted RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 OR4E1P0C645 316 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 SULT1A3P0DMM9 295 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 SULT1A4P0DMN0 295 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 OR5H8P0DN80 308 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 FPR2P25090 351 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 CFHR2P36980 270 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 EIF2B2P49770 351 aaKnown RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 ATXN7L3Q14CW9 347 aaPredicted RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 SRSF7Q16629 238 aaKnown RBP eCLIP8.84□□□□□ -0.99
SS18-217ENST00000580958 C4orf46Q504U0 113 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 AADACL3Q5VUY0 350 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 SHEQ5VZ18 495 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 ZNF626Q68DY1 528 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 ZNF880Q6PDB4 577 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 C20orf204Q6ZNR8 217 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 Q6ZS49 121 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 SLC25A42Q86VD7 318 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 ZNF808Q8N4W9 903 aaPredicted RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 GCSAMQ8N6F7 178 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 ADAD2Q8NCV1 583 aaKnown RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 OR11H7Q8NGC8 314 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 OR11L1Q8NGX0 322 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 MED30Q96HR3 178 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 RIMS4Q9H426 269 aaPredicted RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 TMEM165Q9HC07 324 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 MYOZ1Q9NP98 299 aaPredicted RBP8.84□□□□□ -0.99
SS18-217ENST00000580958 RNF7Q9UBF6 113 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 WIPI2Q9Y4P8 454 aa8.84□□□□□ -0.99
SS18-217ENST00000580958 CFAP46Q8IYW2 2715 aa8.83□□□□□ -1
SS18-217ENST00000580958 KALRNO60229 2985 aa8.83□□□□□ -1
SS18-217ENST00000580958 TRAV39A0A0B4J263 110 aa8.83□□□□□ -1
SS18-217ENST00000580958 TRDCB7Z8K6 153 aa8.83□□□□□ -1
SS18-217ENST00000580958 FABP7O15540 132 aa8.83□□□□□ -1
SS18-217ENST00000580958 CREBL2O60519 120 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 ZNF205O95201 554 aa8.83□□□□□ -1
SS18-217ENST00000580958 LHBP01229 141 aa8.83□□□□□ -1
SS18-217ENST00000580958 CD55P08174 381 aa8.83□□□□□ -1
SS18-217ENST00000580958 ADH4P08319 380 aa8.83□□□□□ -1
SS18-217ENST00000580958 SCTP09683 121 aa8.83□□□□□ -1
SS18-217ENST00000580958 PSG2P11465 335 aa8.83□□□□□ -1
SS18-217ENST00000580958 PGAM2P15259 253 aa8.83□□□□□ -1
SS18-217ENST00000580958 LMO1P25800 156 aa8.83□□□□□ -1
SS18-217ENST00000580958 APOBEC3AP31941 199 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 GLP1RP43220 463 aa8.83□□□□□ -1
SS18-217ENST00000580958 HLA-DRB3P79483 266 aa8.83□□□□□ -1
SS18-217ENST00000580958 COL10A1Q03692 680 aa8.83□□□□□ -1
SS18-217ENST00000580958 TESK1Q15569 626 aa8.83□□□□□ -1
SS18-217ENST00000580958 FAM201AQ5SY85 155 aa8.83□□□□□ -1
SS18-217ENST00000580958 ZNF660Q6AZW8 331 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 ZNF497Q6ZNH5 498 aa8.83□□□□□ -1
SS18-217ENST00000580958 ZCCHC24Q8N2G6 241 aaKnown RBP8.83□□□□□ -1
SS18-217ENST00000580958 MUC20Q8N307 709 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 CD177Q8N6Q3 437 aa8.83□□□□□ -1
SS18-217ENST00000580958 OR5T2Q8NGG2 359 aa8.83□□□□□ -1
SS18-217ENST00000580958 LILRB1Q8NHL6 650 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 Q8TCH9 128 aa8.83□□□□□ -1
SS18-217ENST00000580958 ZNF431Q8TF32 576 aaPredicted RBP8.83□□□□□ -1
SS18-217ENST00000580958 ERGIC1Q969X5 290 aa8.83□□□□□ -1
SS18-217ENST00000580958 SCGB3A2Q96PL1 93 aa8.83□□□□□ -1
SS18-217ENST00000580958 FYTTD1Q96QD9 318 aaKnown RBP8.83□□□□□ -1
SS18-217ENST00000580958 DIRC2Q96SL1 478 aa8.83□□□□□ -1
SS18-217ENST00000580958 DHRS9Q9BPW9 319 aa8.83□□□□□ -1
SS18-217ENST00000580958 TMPRSS13Q9BYE2 586 aa8.83□□□□□ -1
SS18-217ENST00000580958 FXYD6Q9H0Q3 95 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms