RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 DERL3Q96Q80 235 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 OR14A2Q96R54 314 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 CDCA4Q9BXL8 241 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 FAM192AQ9GZU8 254 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 PPIL3Q9H2H8 161 aaKnown RBP8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 TMEM133Q9H2Q1 129 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF696Q9H7X3 374 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 PAK1IP1Q9NWT1 392 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 TAS2R3Q9NYW6 316 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 IL36GQ9NZH8 169 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF581Q9P0T4 197 aa8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 LSM2Q9Y333 95 aaKnown RBP8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 TBL2Q9Y4P3 447 aaKnown RBP8.31□□□□□ -1.08
CCDC88C-206ENST00000553437 NOTCH1P46531 2555 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 TRGV10A0A0A0MS01 117 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 FUOMA2VDF0 154 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 PTGES3LE9PB15 166 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 HTR3BO95264 441 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 MYF6P23409 242 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 CDK2P24941 298 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 SLC35A2P78381 396 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 BDH1Q02338 343 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 PAX5Q02548 391 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 IRF3Q14653 427 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 ATXN7L3Q14CW9 347 aaPredicted RBP8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 LY6EQ16553 131 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 C17orf58Q2M2W7 97 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 KRBOX4Q5JUW0 171 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 PRR31Q5SQ13 230 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 UTF1Q5T230 341 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 PRAMEF5Q5TYX0 476 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 DHRS7BQ6IAN0 325 aaPredicted RBP8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 SLC35E4Q6ICL7 350 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 CCBE1Q6UXH8 406 aaPredicted RBP8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 TRAPPC6BQ86SZ2 158 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 METTL9Q9H1A3 318 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 NCOR1P1Q9H4R4 102 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 DUSP21Q9H596 190 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 IFT22Q9H7X7 185 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 ING3Q9NXR8 418 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 ING4Q9UNL4 249 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 FOXJ3Q9UPW0 622 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 ERGIC3Q9Y282 383 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 RNF114Q9Y508 228 aa8.3□□□□□ -1.08
CCDC88C-206ENST00000553437 MGAM2Q2M2H8 2515 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 A0A1W2PP11 408 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 HSPB6O14558 160 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 CHST1O43916 411 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 IGLV1-47P01700 117 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 JUNBP17275 347 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 CD34P28906 385 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 HSPA13P48723 471 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 RAB13P51153 203 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 GP2P55259 537 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 RBM11P57052 281 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 DYNC1I2Q13409 638 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 INSL4Q14641 139 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 SSX2Q16385 188 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 PLA1AQ53H76 456 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 PAN3Q58A45 887 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 MINOS1Q5TGZ0 78 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 RSBN1Q5VWQ0 802 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 UNQ9370/PRO34162Q6UXP9 181 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 CDH26Q8IXH8 852 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 ABHD12Q8N2K0 398 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 OSR2Q8N2R0 312 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 OR4P4Q8NGL7 312 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 OR13A1Q8NGR1 328 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 PLPPR1Q8TBJ4 325 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 MYDGFQ969H8 173 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 FOXRED1Q96CU9 486 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 OR5M11Q96RB7 305 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 CITED1Q99966 193 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 MND1Q9BWT6 205 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 CLEC7AQ9BXN2 247 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 ANKRD60Q9BZ19 345 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 GAL3ST2Q9H3Q3 398 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 Q9H521 79 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 LINC00574Q9H8X3 128 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 SCN3BQ9NY72 215 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 OR6C3Q9NZP0 311 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 CKLFQ9UBR5 152 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 ST3GAL6Q9Y274 331 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 MINOS1-NBL1R4GNA1 71 aa8.29□□□□□ -1.08
CCDC88C-206ENST00000553437 A0A087X0M5 115 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 KBTBD11-OT1A0A1B0GTJ5 212 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 A0A1B0GX30 115 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 DPPA5A6NC42 116 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 A6NDX4 124 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF729A6NN14 1252 aaPredicted RBP8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 GEMIN2O14893 280 aaKnown RBP8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 ZNF780AO75290 641 aaPredicted RBP8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 MAS1P04201 325 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 KIR2DS4P43632 304 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 KCNJ3P48549 501 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 DYNLT3P51808 116 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 SPHARQ15513 63 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 FAM189A2Q15884 450 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 SLC22A6Q4U2R8 563 aa8.28□□□□□ -1.08
CCDC88C-206ENST00000553437 OR52W1Q6IF63 320 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms