RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	DYRK2	Q92630	601 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	TTTY12	Q9BZ98	90 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	EIF5A2	Q9GZV4	153 aa	Known RBP	12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	PLEK2	Q9NYT0	353 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	MRPS18C	Q9Y3D5	142 aa	Known RBP	12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	OR5H1	A6NKK0	313 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	FAM166B	A8MTA8	275 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	ZNF724	A8MTY0	619 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	NPIPA2	E9PIF3	369 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	NPIPA3	F8WFD2	350 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	NME2P1	O60361	137 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	CCL1	P22362	96 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	BLVRB	P30043	206 aa	Predicted RBP	12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	OR8G1	Q15617	311 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	ANKRD55	Q3KP44	614 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	GGN	Q86UU5	652 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	C20orf196	Q8IYI0	205 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	FDCSP	Q8NFU4	85 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	TERB2	Q8NHR7	220 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	MUCL1	Q96DR8	90 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	ALKBH3	Q96Q83	286 aa	Predicted RBP	12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	SLC35B3	Q9H1N7	401 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	NELFA	Q9H3P2	528 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	MOB1A	Q9H8S9	216 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	KCNJ16	Q9NPI9	418 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	GPR173	Q9NS66	373 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	FAM212B	Q9NTI7	297 aa	Predicted RBP	12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	AMDHD2	Q9Y303	409 aa		12.97	□□□□□ -0.33
CHFR-223	ENST00000544268	SPRY1	O43609	319 aa	Predicted RBP	12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	JTB	O76095	146 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	GAPDH	P04406	335 aa	Known RBP	12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	SOD3	P08294	240 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	GABRR1	P24046	479 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	ARG2	P78540	354 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	FAM3A	P98173	230 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	PDCD1	Q15116	288 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	KCNMB1	Q16558	191 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	AADACL3	Q5VUY0	350 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	CLEC18B	Q6UXF7	455 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	KCNE4	Q8WWG9	221 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	RTBDN	Q9BSG5	229 aa	Predicted RBP	12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	OR10A2	Q9H208	303 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	OR51B6	Q9H340	312 aa		12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	MCTS1	Q9ULC4	181 aa	Known RBP	12.96	□□□□□ -0.33
CHFR-223	ENST00000544268	ZNF407	Q9C0G0	2248 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	GJE1	A6NN92	205 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268		A8MWP6	167 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BK	O60814	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	PTBP3	O95758	552 aa	Known RBP	12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BJ	P06899	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	AMY2B	P19961	511 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BO	P23527	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BB	P33778	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	MAGEA5	P43359	124 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	MEOX1	P50221	254 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	SUCLG1	P53597	346 aa	Known RBP	12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	SNU13	P55769	128 aa	Known RBP	12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	GFRA1	P56159	465 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BD	P58876	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BC	P62807	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	FOXC1	Q12948	553 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST2H2BE	Q16778	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	ZNF674	Q2M3X9	581 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	DEFB109B	Q30KR1	87 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	MIDN	Q504T8	468 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	TMEM128	Q5BJH2	165 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	BEND2	Q8NDZ0	799 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HAS2	Q92819	552 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BH	Q93079	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BN	Q99877	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	HIST1H2BM	Q99879	126 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	SUCNR1	Q9BXA5	334 aa		12.96	□□□□□ -0.34
CHFR-223	ENST00000544268	KLF13	Q9Y2Y9	288 aa	Predicted RBP	12.96	□□□□□ -0.34
CHFR-223	ENST00000544268		M0R135	149 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	DHH	O43323	396 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	IGHV3-9	P01782	118 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	CSNK2A1	P68400	391 aa	Predicted RBP	12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	TNFRSF9	Q07011	255 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	ZNF774	Q6NX45	483 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	OR51F2	Q8NH61	342 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	FGFBP3	Q8TAT2	258 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	TMEM54	Q969K7	222 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	ZNF799	Q96GE5	643 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	OR10C1	Q96KK4	312 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	NOL4L	Q96MY1	436 aa	Predicted RBP	12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	ULBP2	Q9BZM5	246 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	ZNF701	Q9NV72	531 aa	Predicted RBP	12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	B4GALT7	Q9UBV7	327 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	FBLN5	Q9UBX5	448 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	GPR132	Q9UNW8	380 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	KIAA1549	Q9HCM3	1950 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	DMXL2	Q8TDJ6	3036 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	FREM1	Q5H8C1	2179 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	MGA	Q8IWI9	3026 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	DNAJC13	O75165	2243 aa		12.95	□□□□□ -0.34
CHFR-223	ENST00000544268	LOC102725191	A0A1B0GVB3	256 aa		12.94	□□□□□ -0.34
CHFR-223	ENST00000544268	ZNF891	A8MT65	544 aa	Predicted RBP	12.94	□□□□□ -0.34
CHFR-223	ENST00000544268	KNG1	P01042	644 aa		12.94	□□□□□ -0.34
CHFR-223	ENST00000544268	CRYAB	P02511	175 aa	Known RBP	12.94	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms