RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OLFML2AQ68BL7 652 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 BAIAP2L2Q6UXY1 529 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 SGMS2Q8NHU3 365 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 MYDGFQ969H8 173 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 MALSU1Q96EH3 234 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 FAM192AQ9GZU8 254 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 METTL9Q9H1A3 318 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 BEX1Q9HBH7 125 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 CKLFQ9UBR5 152 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 KIAA2026Q5HYC2 2103 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 A0A087X0M5 115 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 TRGV10A0A0A0MS01 117 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 A0A1B0GX30 115 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 A0A1W2PP11 408 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 A0A1W2PPK0 400 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 BTBD17A6NE02 478 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 H0YHG0 523 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 IGLV1-47P01700 117 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 ARG1P05089 322 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 CD37P11049 281 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 CRHBPP24387 322 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 KCNJ3P48549 501 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 DYNLT3P51808 116 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 LGALS4P56470 323 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 PROK1P58294 105 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 KRTAP10-3P60369 221 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 GPR50Q13585 617 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 INSL4Q14641 139 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 ATXN7L3Q14CW9 347 aaPredicted RBP11.47□□□□□ -0.57
USP28-209ENST00000540925 SPHARQ15513 63 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 C17orf58Q2M2W7 97 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 KRBOX4Q5JUW0 171 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 MINOS1Q5TGZ0 78 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 PRAMEF5Q5TYX0 476 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 RSBN1Q5VWQ0 802 aaPredicted RBP11.47□□□□□ -0.57
USP28-209ENST00000540925 IZUMO2Q6UXV1 221 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 LINC00596Q86U02 117 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 OSR2Q8N2R0 312 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 OR4P4Q8NGL7 312 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 PLPPR1Q8TBJ4 325 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 THRSPQ92748 146 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 FOXRED1Q96CU9 486 aaPredicted RBP11.47□□□□□ -0.57
USP28-209ENST00000540925 NR1H4Q96RI1 486 aaPredicted RBP11.47□□□□□ -0.57
USP28-209ENST00000540925 CLEC7AQ9BXN2 247 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 VCX3BQ9H321 246 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 GAL3ST2Q9H3Q3 398 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 SCN3BQ9NY72 215 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 ST3GAL6Q9Y274 331 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 MINOS1-NBL1R4GNA1 71 aa11.47□□□□□ -0.57
USP28-209ENST00000540925 GEMIN2O14893 280 aaKnown RBP11.46□□□□□ -0.57
USP28-209ENST00000540925 ZNF780AO75290 641 aaPredicted RBP11.46□□□□□ -0.57
USP28-209ENST00000540925 HTR3BO95264 441 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 CDK2P24941 298 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 PAN3Q58A45 887 aaKnown RBP11.46□□□□□ -0.57
USP28-209ENST00000540925 PRR31Q5SQ13 230 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 UTF1Q5T230 341 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 DHRS7BQ6IAN0 325 aaPredicted RBP11.46□□□□□ -0.57
USP28-209ENST00000540925 MS4A15Q8N5U1 240 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 OR4D6Q8NGJ1 314 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 CITED1Q99966 193 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 ZNF696Q9H7X3 374 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 OR6C3Q9NZP0 311 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 ING4Q9UNL4 249 aa11.46□□□□□ -0.57
USP28-209ENST00000540925 TGP01266 2768 aa11.46□□□□□ -0.58
USP28-209ENST00000540925 KBTBD11-OT1A0A1B0GTJ5 212 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 ZNF729A6NN14 1252 aaPredicted RBP11.45□□□□□ -0.58
USP28-209ENST00000540925 NPIPB11E5RHQ5 1161 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 CHST1O43916 411 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 ATP6V1G2O95670 118 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 SERPINA2P20848 420 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 MAPK3P27361 379 aaPredicted RBP11.45□□□□□ -0.58
USP28-209ENST00000540925 HSPA13P48723 471 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 TPBGQ13641 420 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 MPV17LQ2QL34 196 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 ACSM3Q53FZ2 586 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 OR52W1Q6IF63 320 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 CCBE1Q6UXH8 406 aaPredicted RBP11.45□□□□□ -0.58
USP28-209ENST00000540925 LIAT1Q6ZQX7 453 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 TRAPPC6BQ86SZ2 158 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 LRRTM1Q86UE6 522 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 RTN4RL2Q86UN3 420 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 SUMF2Q8NBJ7 301 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 OR13A1Q8NGR1 328 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 MUL1Q969V5 352 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 KIRREL1Q96J84 757 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 DPCDQ9BVM2 203 aaPredicted RBP11.45□□□□□ -0.58
USP28-209ENST00000540925 RCC2Q9P258 522 aaKnown RBP11.45□□□□□ -0.58
USP28-209ENST00000540925 KIF25Q9UIL4 384 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 TPRKBQ9Y3C4 175 aa11.45□□□□□ -0.58
USP28-209ENST00000540925 A6NDX4 124 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 FAM90A22PA8MWA6 464 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 HSPB6O14558 160 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 RGS10O43665 173 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 OR7C1O76099 320 aaPredicted RBP11.44□□□□□ -0.58
USP28-209ENST00000540925 CSTBP04080 98 aaKnown RBP11.44□□□□□ -0.58
USP28-209ENST00000540925 MAS1P04201 325 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 GTF2F2P13984 249 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 SRSF4Q08170 494 aaKnown RBP11.44□□□□□ -0.58
USP28-209ENST00000540925 SSX2Q16385 188 aa11.44□□□□□ -0.58
USP28-209ENST00000540925 LY6EQ16553 131 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms