RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 SLC35E3Q7Z769 313 aa12.15□□□□□ -0.46
LIG1-203ENST00000536218 TMEM105Q8N8V8 129 aa12.15□□□□□ -0.46
LIG1-203ENST00000536218 TBX15Q96SF7 602 aa12.15□□□□□ -0.46
LIG1-203ENST00000536218 OR2J1Q9GZK6 312 aa12.15□□□□□ -0.46
LIG1-203ENST00000536218 ZNF160Q9HCG1 818 aa12.15□□□□□ -0.46
LIG1-203ENST00000536218 PHF3Q92576 2039 aaKnown RBP12.15□□□□□ -0.46
LIG1-203ENST00000536218 LIPT2A6NK58 231 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 E5RGE8 158 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 RRP8O43159 456 aaKnown RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 MPIG6BO95866 241 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 CEACAM1P13688 526 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 CD33P20138 364 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 NOVA1P51513 510 aaKnown RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 CSNK2A1P68400 391 aaPredicted RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 TAF9Q16594 264 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 SP6Q3SY56 376 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 CSNK2A3Q8NEV1 391 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 SLC26A10Q8NG04 563 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 OR52N4Q8NGI2 321 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 ASB10Q8WXI3 467 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 VAX2Q9UIW0 290 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 NSG2Q9Y328 171 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 KLF7O75840 302 aaPredicted RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 LCATP04180 440 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 VSIG8P0DPA2 414 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 RPS2P15880 293 aaKnown RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 PTGER4P35408 488 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 KCTD18Q6PI47 426 aaPredicted RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 VHLLQ6RSH7 139 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 CLEC2AQ6UVW9 174 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 ARV1Q9H2C2 271 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 GAL3ST2Q9H3Q3 398 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 SMDT1Q9H4I9 107 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 BANF2Q9H503 90 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 HHLA2Q9UM44 414 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 B3GALT5Q9Y2C3 310 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 LRP12Q9Y561 859 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 LOC107986453A0A1B0GWG9 222 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 NTN3O00634 580 aaPredicted RBP12.14□□□□□ -0.47
LIG1-203ENST00000536218 TNFSF12O43508 249 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 RAB7AP51149 207 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 RAC1P63000 192 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 SPSB3Q6PJ21 355 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 OR2AJ1Q8NGZ0 328 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 FGGYQ96C11 551 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 LRFN1Q9P244 771 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 NAGKQ9UJ70 344 aa12.14□□□□□ -0.47
LIG1-203ENST00000536218 A0A1W2PPQ1 181 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 ZNF814B7Z6K7 855 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 SOCS1O15524 211 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 GPR137BO60478 399 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 OTX2P32243 289 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 FAM180AQ6UWF9 173 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 OR2M3Q8NG83 312 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 SNIP1Q8TAD8 396 aaKnown RBP12.13□□□□□ -0.47
LIG1-203ENST00000536218 GNG13Q9P2W3 67 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 COL5A1P20908 1838 aaPredicted RBP12.13□□□□□ -0.47
LIG1-203ENST00000536218 P2RY10O00398 339 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 DAP3P51398 398 aaKnown RBP12.13□□□□□ -0.47
LIG1-203ENST00000536218 SUMO3P55854 103 aaPredicted RBP12.13□□□□□ -0.47
LIG1-203ENST00000536218 ZFP36L1Q07352 338 aaKnown RBP12.13□□□□□ -0.47
LIG1-203ENST00000536218 LEMD1Q68G75 181 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.13□□□□□ -0.47
LIG1-203ENST00000536218 CDH20Q9HBT6 801 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 KIAA1456Q9P272 454 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 FUT9Q9Y231 359 aa12.13□□□□□ -0.47
LIG1-203ENST00000536218 IGHV1-45A0A0A0MS14 117 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 A0A1B0GW64 132 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 FAM230AA0A1W2PPH8 454 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 ZFP92A6NM28 416 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 CCL3P10147 92 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 IGFBP3P17936 291 aaPredicted RBP12.12□□□□□ -0.47
LIG1-203ENST00000536218 ATP6V0CP27449 155 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 CHRNB4P30926 498 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 CDAP32320 146 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 CST9LP1Q5W188 147 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 SLC7A11Q9UPY5 501 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 PAM16Q9Y3D7 125 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 CHCHD2Q9Y6H1 151 aaPredicted RBP12.12□□□□□ -0.47
LIG1-203ENST00000536218 NSG1A0A0A6YYJ2 146 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 FIGNL2A6NMB9 653 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 MFAP5Q13361 173 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 FAM189A2Q15884 450 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 SLC23A3Q6PIS1 610 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 TOMM20LQ6UXN7 152 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 SLC25A26Q70HW3 274 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 OR52N5Q8NH56 324 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 IL22RA2Q969J5 263 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 TP53RKQ96S44 253 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 KLHL13Q9P2N7 655 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 POLR1DQ9Y2S0 133 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 LOC101059948A0A1B0GTJ6 334 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 PPP5D1E7EU14 171 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 CYB5R3P00387 301 aaPredicted RBP12.12□□□□□ -0.47
LIG1-203ENST00000536218 OPN1MWP04001 364 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 OPN1MW2P0DN77 364 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 OPN1MW3P0DN78 364 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 COX6A1P12074 109 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 GNB2P62879 340 aa12.12□□□□□ -0.47
LIG1-203ENST00000536218 PRSS8Q16651 343 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 163.5 ms