RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PNPOQ9NVS9 261 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 SLC2A8Q9NY64 477 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 DNAJC27Q9NZQ0 273 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 RHCGQ9UBD6 479 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 HAO1Q9UJM8 370 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 PSG11Q9UQ72 335 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 SH3GLB1Q9Y371 365 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 SNX13Q9Y5W8 968 aa3.51□□□□□ -1.85
USP4-209ENST00000475873 TNXBP22105 4242 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 A0A1W2PN81 502 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 DHRS12A0PJE2 317 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 PQLC2LA1A4F0 135 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 ANKRD34BA5PLL1 514 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 OR5B21A6NL26 309 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 HSD17B6O14756 317 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 SPAG7O75391 227 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 HLA-DQA2P01906 255 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 CD74P04233 296 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 IFNA4P05014 189 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 NFYBP25208 207 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 DUSP1P28562 367 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 CHRNA7P36544 502 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 VHLP40337 213 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 YAP1P46937 504 aaKnown RBP3.5□□□□□ -1.85
USP4-209ENST00000475873 RAB7AP51149 207 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 CRIP2P52943 208 aaPredicted RBP3.5□□□□□ -1.85
USP4-209ENST00000475873 PRRX1P54821 245 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 SSTP61278 116 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 GNG11P61952 73 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 DEFA5Q01523 94 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 ZNF816Q0VGE8 651 aaPredicted RBP3.5□□□□□ -1.85
USP4-209ENST00000475873 CBX3Q13185 183 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 MADCAM1Q13477 382 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 APOFQ13790 326 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 ECSCRQ19T08 205 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 LRRC36Q1X8D7 754 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 DEFB114Q30KQ6 69 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 SLC36A3Q495N2 470 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 DLEU7Q6UYE1 221 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 HDXQ7Z353 690 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 TRAPPC6BQ86SZ2 158 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 MOB3BQ86TA1 216 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 ANGPTL5Q86XS5 388 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 TMEM217Q8N7C4 229 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 RNF148Q8N7C7 305 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 C11orf65Q8NCR3 313 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 OR5A2Q8NGI9 324 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 OR51L1Q8NGJ5 315 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 OR2T10Q8NGZ9 312 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 OR4K13Q8NH42 304 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 UBALD1Q8TB05 177 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 FBLIM1Q8WUP2 373 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 RCN3Q96D15 328 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 COQ2Q96H96 371 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 APOPT1Q96IL0 206 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 MS4A10Q96PG2 267 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 MBOAT4Q96T53 435 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 WDR12Q9GZL7 423 aaKnown RBP3.5□□□□□ -1.85
USP4-209ENST00000475873 MFFQ9GZY8 342 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 FAM107BQ9H098 131 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 ZCCHC4Q9H5U6 513 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 GORASP2Q9H8Y8 452 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 SCPEP1Q9HB40 452 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 SLC25A19Q9HC21 320 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 ABCB9Q9NP78 766 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 MTCH1Q9NZJ7 389 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 RAP2CQ9Y3L5 183 aa3.5□□□□□ -1.85
USP4-209ENST00000475873 SMIM23A6NLE4 172 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ZNF878C9JN71 531 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 L7N2F9 121 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 BMPR1BO00238 502 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ST8SIA5O15466 376 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 RBMXL2O75526 392 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 S1PR2O95136 353 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 NDUFB2O95178 105 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 HAND1O96004 215 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 MOSP00540 346 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 HLA-DRB1P01911 266 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 SMR3BP02814 79 aaPredicted RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 PRB4P10163 310 aaPredicted RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 ZP3P21754 424 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 CFL1P23528 166 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 GABRR1P24046 479 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 PEX2P28328 305 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ERP29P30040 261 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 FUSP35637 526 aaKnown RBP eCLIP3.49□□□□□ -1.85
USP4-209ENST00000475873 GNG10P50151 68 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 RPL14P50914 215 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 GZMMP51124 257 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 MTPNP58546 118 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ABCE1P61221 599 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 ZNF91Q05481 1191 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 AESQ08117 197 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 CYLC2Q14093 348 aaPredicted RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 TAF13Q15543 124 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 GUCA2BQ16661 112 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 AARDQ4LEZ3 155 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 PVRIGQ6DKI7 326 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 FDX2Q6P4F2 183 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 DNM1P34Q6PK57 102 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms