RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PP6455Q8WZ26 134 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BHQ93079 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 TVP23CQ96ET8 276 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 MARS2Q96GW9 593 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 CYYR1Q96J86 154 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BNQ99877 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BMQ99879 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 RARRES2Q99969 163 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 C11orf1Q9H5F2 150 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF701Q9NV72 531 aaPredicted RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 NECAP2Q9NVZ3 263 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 B3GAT1Q9P2W7 334 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 MCTS1Q9ULC4 181 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HSF4Q9ULV5 492 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SPENQ96T58 3664 aaKnown RBP8.29□□□□□ -1.08
HDAC3-205ENST00000469550 IGHG1P01857 330 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 CXCL1P09341 107 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 OR5AC1P0C628 307 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 PGA4P0DJD7 388 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 PGA3P0DJD8 388 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 RD3LP0DJH9 198 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF728P0DKX0 622 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 SERPINA2P20848 420 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 SFTPDP35247 375 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 FOLR3P41439 243 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 GLIPR1P48060 266 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 UCP3P55916 312 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 NHLH2Q02577 135 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF506Q5JVG8 444 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 FAM69BQ5VUD6 431 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 SLC22A25Q6T423 547 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 CLEC9AQ6UXN8 241 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 FBXW12Q6X9E4 464 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 TMEM182Q6ZP80 229 aaPredicted RBP8.29□□□□□ -1.08
HDAC3-205ENST00000469550 Q6ZS92 163 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 STX12Q86Y82 276 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 NOXO1Q8NFA2 376 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 OR4D5Q8NGN0 318 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 HAS2Q92819 552 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 MSI2Q96DH6 328 aaKnown RBP8.29□□□□□ -1.08
HDAC3-205ENST00000469550 EMC6Q9BV81 110 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 TMEM242Q9NWH2 141 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 POLR1DQ9Y2S0 133 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 MMP24Q9Y5R2 645 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 V9GYS6 101 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 DOPEY1Q5JWR5 2465 aa8.29□□□□□ -1.08
HDAC3-205ENST00000469550 A0A0U1RQV5 110 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR5H15A6NDH6 313 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR5H1A6NKK0 313 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 VSTM2BA6NLU5 285 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 SLC31A2O15432 143 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 DIRAS3O95661 229 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 CDS2O95674 445 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 DDTP30046 118 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OTX2P32243 289 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 CLRN1P58418 232 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 RND3P61587 244 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 EWSR1Q01844 656 aaKnown RBP eCLIP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 MRPL49Q13405 166 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 GNMTQ14749 295 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ABCA11PQ4W5N1 156 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 HIST2H2BCQ6DN03 193 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 DPPA3Q6W0C5 159 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 FAM57BQ71RH2 274 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 LYZL2Q7Z4W2 148 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 PPP1R32Q7Z5V6 425 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 FBXL14Q8N1E6 418 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR5L2Q8NGL0 311 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR5R1Q8NH85 324 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 RNASE11Q8TAA1 199 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 SNRNP40Q96DI7 357 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 RBMXL1Q96E39 390 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 BOD1Q96IK1 185 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ABHD14BQ96IU4 210 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 Q96M66 194 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF552Q9H707 407 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 PLEKHJ1Q9NW61 149 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 PTRH2Q9Y3E5 179 aaKnown RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 FAM230AA0A1W2PPH8 454 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF732B4DXR9 585 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 TSTD3H0UI37 97 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 HSPA12AO43301 675 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 XRCC2O43543 280 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 PITX3O75364 302 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 LY86O95711 162 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 UMODP07911 640 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 CEACAM6P40199 344 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 CSNK1A1P48729 337 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 TAS2R60P59551 318 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 NKX6-1P78426 367 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-205ENST00000469550 CCL20P78556 96 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 DLK1P80370 383 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 RSU1Q15404 277 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 HIST3H3Q16695 136 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 SLC25A53Q5H9E4 307 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 SPNS3Q6ZMD2 512 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 C6orf201Q7Z4U5 140 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF429Q86V71 674 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 UEVLDQ8IX04 471 aa8.28□□□□□ -1.08
HDAC3-205ENST00000469550 OR2C3Q8N628 320 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms