RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CMPK1P30085 196 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 HRH1P35367 487 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 DVL1P1P54792 670 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 GP2P55259 537 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC25A3Q00325 362 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CRYZQ08257 329 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 HSD52Q0P140 79 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 EDDM3AQ14507 147 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF266Q14584 549 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SNRNP35Q16560 246 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 C4orf26Q17RF5 130 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 VWA2Q5GFL6 755 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM255AQ5JRV8 349 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CLEC12AQ5QGZ9 265 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 C9orf57Q5W0N0 161 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ARL9Q6T311 187 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ENPP7Q6UWV6 458 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM184AQ6ZMB5 413 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TMUB2Q71RG4 321 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 GKN2Q86XP6 184 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 PNKDQ8N490 385 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SARAFQ96BY9 339 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 IMP4Q96G21 291 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM126AQ9H061 195 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 MED28Q9H204 178 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 GOLGA2P5Q9HBQ8 144 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ACKR4Q9NPB9 350 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 LYRM2Q9NU23 88 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 PLEKHB1Q9UF11 243 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ST6GALNAC2Q9UJ37 374 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 HS3ST2Q9Y278 367 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 POLDIP2Q9Y2S7 368 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 YARS2Q9Y2Z4 477 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ENPP4Q9Y6X5 453 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ANK1P16157 1881 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TDRD15B5MCY1 1934 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A087WUU8 490 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TRAV38-1A0A0B4J264 116 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1W2PPI3 338 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1W2PRD5 423 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 GAGE12HA6NDE8 117 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4C46A6NHA9 309 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 FOXS1O43638 330 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM20BO75063 409 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4A8P0C604 315 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SP9P0CG40 484 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 PGAM2P15259 253 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TCN2P20062 427 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 IMPA1P29218 277 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CX3CR1P49238 355 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CYP2J2P51589 502 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 VAMP7P51809 220 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 FZD2Q14332 565 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TAL2Q16559 108 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 IAH1Q2TAA2 248 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ANXA2RQ3ZCQ2 193 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 C6orf141Q5SZD1 244 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 AGTRAPQ6RW13 159 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OPN5Q6U736 354 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF788Q6ZQV5 615 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 NEGR1Q7Z3B1 354 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZFP41Q8N8Y5 198 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF439Q8NDP4 499 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR2T27Q8NH04 317 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4X1Q8NH49 305 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5K2Q8NHB8 316 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SYNPRQ8TBG9 265 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 BLNKQ8WV28 456 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 EEF1AKMT1Q8WVE0 214 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CIB3Q96Q77 187 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 NRTNQ99748 197 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 PBDC1Q9BVG4 233 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 C20orf27Q9GZN8 174 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR51I1Q9H343 314 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZDHHC11Q9H8X9 412 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TAF9BQ9HBM6 251 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 RETNQ9HD89 108 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TAS2R16Q9NYV7 291 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 THYN1Q9P016 225 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 PRO0628Q9UI54 55 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 BOKQ9UMX3 212 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CHD6Q8TD26 2715 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 GREB1Q4ZG55 1949 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CITO14578 2027 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CACNA1IQ9P0X4 2223 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A0B4J2E0 115 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1B0GX12 115 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1W2PRS3 328 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 FABP5P3A8MUU1 101 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 J3KR12 359 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 RAMP2O60895 175 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 CLDN1O95832 211 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 EML2O95834 649 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 MAS1P04201 325 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 PRSS56P0CW18 603 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 CD1DP15813 335 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 FASP25445 335 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 RPL12P30050 165 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 DLX6P56179 175 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 GABARAPL2P60520 117 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms