RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 GNG13Q9P2W3 67 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 ZNHIT1O43257 154 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 HSPA12AO43301 675 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 EPHA8P29322 1005 aaPredicted RBP19.3■□□□□ 0.68
TRIM28-202ENST00000341753 CMTM1Q8IZ96 169 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 OR5L2Q8NGL0 311 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 RASL10BQ96S79 203 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 TMEM222Q9H0R3 208 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 PRDM6Q9NQX0 595 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 LYRM2Q9NU23 88 aaPredicted RBP19.3■□□□□ 0.68
TRIM28-202ENST00000341753 RARRES3Q9UL19 164 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 A0A087WWC5 75 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 RAB11AP62491 216 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 RABEPKQ7Z6M1 372 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF100Q8IYN0 542 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 BCO1Q9HAY6 547 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 SIT1Q9Y3P8 196 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 IGLV3-12A0A075B6K2 115 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 ZFAND5O76080 213 aa19.29■□□□□ 0.68
TRIM28-202ENST00000341753 CPNE4Q96A23 557 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-202ENST00000341753 NRASP01111 189 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF506Q5JVG8 444 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 C10orf128Q5T292 105 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 LYSMD4Q5XG99 296 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 FAM180AQ6UWF9 173 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 TMEM54Q969K7 222 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 SMOC1Q9H4F8 434 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 IGLV3-32A0A0A0MS00 114 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 ZFP92A6NM28 416 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 CDS2O95674 445 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 MALLQ13021 153 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 CNN3Q15417 329 aaKnown RBP19.28■□□□□ 0.68
TRIM28-202ENST00000341753 RAET1LQ5VY80 246 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 SELENOHQ8IZQ5 122 aaKnown RBP19.28■□□□□ 0.68
TRIM28-202ENST00000341753 FAM210BQ96KR6 192 aa19.28■□□□□ 0.68
TRIM28-202ENST00000341753 OR5H1A6NKK0 313 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 HSPB6O14558 160 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 HSPB1P04792 205 aaKnown RBP19.27■□□□□ 0.68
TRIM28-202ENST00000341753 MPV17LQ2QL34 196 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 SSX9Q7RTT3 188 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 SPACA9Q96E40 222 aaPredicted RBP19.27■□□□□ 0.68
TRIM28-202ENST00000341753 SNX22Q96L94 193 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 SSX3Q99909 188 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 SLC25A31Q9H0C2 315 aa19.27■□□□□ 0.68
TRIM28-202ENST00000341753 CHST1O43916 411 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 FUT3P21217 361 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 NPBWR2P48146 333 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 HIST1H3AP68431 136 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 HLA-DRB3P79483 266 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 HIST2H3PS2Q5TEC6 136 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF818PQ6ZRF7 136 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 DPPA2Q7Z7J5 298 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 DMRTC2Q8IXT2 367 aaPredicted RBP19.27■□□□□ 0.67
TRIM28-202ENST00000341753 PIGCQ92535 297 aa19.27■□□□□ 0.67
TRIM28-202ENST00000341753 TERTO14746 1132 aaKnown RBP19.26■□□□□ 0.67
TRIM28-202ENST00000341753 PDCD6O75340 191 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 PDGFBP01127 241 aaPredicted RBP19.26■□□□□ 0.67
TRIM28-202ENST00000341753 HLA-HP01893 362 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 PGA5P0DJD9 388 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 HLA-BQ31612 363 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 GAPTQ8N292 157 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 CLDN23Q96B33 292 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 DEFB126Q9BYW3 111 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 UFSP2Q9NUQ7 469 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 BTBD17A6NE02 478 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 TCN2P20062 427 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 CD200P41217 278 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 UCP3P55916 312 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 H3F3AP84243 136 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 THNSL2Q86YJ6 484 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 CALHM1Q8IU99 346 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 IL22RA1Q8N6P7 574 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 C10orf35Q96D05 121 aa19.26■□□□□ 0.67
TRIM28-202ENST00000341753 FGF8P55075 233 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-202ENST00000341753 IZUMO4Q1ZYL8 232 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF468Q5VIY5 522 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF880Q6PDB4 577 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 Q6ZSR3 168 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 SAP25Q8TEE9 199 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 PATE3B3GLJ2 98 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 CRYGSP22914 178 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 TLE1Q04724 770 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 PLCXD3Q63HM9 321 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF385CQ66K41 422 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-202ENST00000341753 SNIP1Q8TAD8 396 aaKnown RBP19.25■□□□□ 0.67
TRIM28-202ENST00000341753 ZDBF2Q9HCK1 2354 aa19.25■□□□□ 0.67
TRIM28-202ENST00000341753 IGKV1D-13A0A0B4J2D9 117 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF732B4DXR9 585 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 CFIP05156 583 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 SCTP09683 121 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 IGKV1-13P0DP09 117 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 B4GALT1P15291 398 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 TMEM267Q0VDI3 215 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 LCN15Q6UWW0 184 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 LHFPL2Q6ZUX7 228 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 MAFAQ8NHW3 353 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 SIGLEC12Q96PQ1 595 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 SIRT7Q9NRC8 400 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 CHCHD2Q9Y6H1 151 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 LOC102725191A0A1B0GVB3 256 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms