RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CAPSLQ8WWF8 208 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 DECR2Q9NUI1 292 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 NECAP2Q9NVZ3 263 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 RASL12Q9NYN1 266 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 GPR132Q9UNW8 380 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 hCG_1807616A0A1W2PRN6 198 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 VSTM5A8MXK1 200 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 OR4E1P0C645 316 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 OR5H8P0DN80 308 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 FPR2P25090 351 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 MDH2P40926 338 aaKnown RBP13.03□□□□□ -0.32
LIMS1-202ENST00000338045 GMFBP60983 142 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 SMIM21Q3B7S5 101 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 FAHD2BQ6P2I3 314 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF880Q6PDB4 577 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 DHRS11Q6UWP2 260 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 TMED4Q7Z7H5 227 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 MRPL30Q8TCC3 161 aaKnown RBP13.03□□□□□ -0.32
LIMS1-202ENST00000338045 MARCH1Q8TCQ1 289 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 ITLN1Q8WWA0 313 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 FAHD2AQ96GK7 314 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 FYTTD1Q96QD9 318 aaKnown RBP13.03□□□□□ -0.32
LIMS1-202ENST00000338045 SEBOXQ9HB31 216 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-202ENST00000338045 CHMP1AQ9HD42 196 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-202ENST00000338045 ING3Q9NXR8 418 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 GLS2Q9UI32 602 aa13.03□□□□□ -0.32
LIMS1-202ENST00000338045 CHD3Q12873 2000 aaKnown RBP13.02□□□□□ -0.32
LIMS1-202ENST00000338045 E7EQL1 145 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-202ENST00000338045 SSNA1O43805 119 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 CD3EP07766 207 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 CD55P08174 381 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 HOXA4Q00056 320 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-202ENST00000338045 SURF2Q15527 256 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-202ENST00000338045 PAN3Q58A45 887 aaKnown RBP13.02□□□□□ -0.32
LIMS1-202ENST00000338045 FAM90A1Q86YD7 464 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 OR52B4Q8NGK2 314 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 DIRC2Q96SL1 478 aa13.02□□□□□ -0.32
LIMS1-202ENST00000338045 DIDO1Q9BTC0 2240 aaKnown RBP13.02□□□□□ -0.33
LIMS1-202ENST00000338045 OR5H14A6NHG9 310 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 TUBAL3A6NHL2 446 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 IFNL4K9M1U5 179 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 SIRPB1O00241 398 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 LHBP01229 141 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 CXCL3P19876 107 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 GNLYP22749 145 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 TNFSF4P23510 183 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 UQCRFS1P47985 274 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 NPY4RP50391 375 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 TNFAIP6P98066 277 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-202ENST00000338045 BEX5Q5H9J7 111 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 C17orf107Q6ZR85 190 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 MOGAT3Q86VF5 341 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 MUC20Q8N307 709 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-202ENST00000338045 GCSAMQ8N6F7 178 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF431Q8TF32 576 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-202ENST00000338045 ERGIC1Q969X5 290 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 SCGB3A2Q96PL1 93 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 LIME1Q9H400 295 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF69Q9UC07 566 aa13.02□□□□□ -0.33
LIMS1-202ENST00000338045 C17orf100A8MU93 164 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 SIAH2O43255 324 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 EGR1P18146 543 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 AGAP20933 346 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 SERPINF1P36955 418 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 ECI1P42126 302 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF497Q6ZNH5 498 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 C20orf204Q6ZNR8 217 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF808Q8N4W9 903 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-202ENST00000338045 SPICQ8N5J4 248 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 TMEM185AQ8NFB2 350 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 Q8TCH9 128 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 ZNF2Q9BSG1 426 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-202ENST00000338045 C5orf66Q9H5L9 145 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 OR14J1Q9UGF5 321 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 NPTNQ9Y639 398 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 HIVEP3Q5T1R4 2406 aa13.01□□□□□ -0.33
LIMS1-202ENST00000338045 MEIKINA0A087WXM9 373 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 KIR2DS1A0A191URI9 304 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 RFPL4AA6NLU0 287 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 RFPL4AL1F8VTS6 287 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 H7C1Q1 480 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 PSPNO60542 156 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 ZBTB25P24278 435 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 KIR2DS4P43632 304 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 CEBPDP49716 269 aaPredicted RBP13□□□□□ -0.33
LIMS1-202ENST00000338045 TAGLNQ01995 201 aaKnown RBP13□□□□□ -0.33
LIMS1-202ENST00000338045 DHRS2Q13268 280 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 KIR2DS1Q14954 304 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 PLPPR1Q8TBJ4 325 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 GCM1Q9NP62 436 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 RNF115Q9Y4L5 304 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 ICE1Q9Y2F5 2266 aa13□□□□□ -0.33
LIMS1-202ENST00000338045 TRDCB7Z8K6 153 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 FABP7O15540 132 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 LOXP28300 417 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 TAS2R31P59538 309 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 UBE2MP61081 183 aaKnown RBP12.99□□□□□ -0.33
LIMS1-202ENST00000338045 DHODHQ02127 395 aa12.99□□□□□ -0.33
LIMS1-202ENST00000338045 TLE1Q04724 770 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms