RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MDKP21741 143 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 P2RY1P47900 373 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 FHITP49789 147 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PNLIPRP2P54317 469 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ZNF117Q03924 483 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 C2orf27AQ580R0 203 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 CRIPAKQ8N1N5 446 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ROBO4Q8WZ75 1007 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 MRPL24Q96A35 216 aaKnown RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 ULBP2Q9BZM5 246 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 Q9N2K0 584 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 DYNLRB1Q9NP97 96 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 HRASLS2Q9NWW9 162 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 MRM2Q9UI43 246 aaKnown RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 MAP1LC3B2A6NCE7 125 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 RRP8O43159 456 aaKnown RBP5.68□□□□□ -1.5
VPS35-201ENST00000299138 UPK3AO75631 287 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 AGAP20933 346 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 SMAGPQ0VAQ4 97 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PRSS8Q16651 343 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 LINC01590Q5TEZ4 76 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 MRPL54Q6P161 138 aaKnown RBP5.68□□□□□ -1.5
VPS35-201ENST00000299138 RABEPKQ7Z6M1 372 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 C5orf17Q8NAS9 161 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 MAP1LC3BQ9GZQ8 125 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 CDRT15L2A8MXV6 281 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 MGPP08493 103 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 ADRA2AP08913 450 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 TNFRSF4P43489 277 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 THSD4Q6ZMP0 1018 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 AQP3Q92482 292 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 APOOQ9BUR5 198 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 CRISPLD2Q9H0B8 497 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PLSCR4Q9NRQ2 329 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 ANKRD12Q6UB98 2062 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PRSS37A4D1T9 235 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PIN1P1O15428 100 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PLAUP00749 431 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 SFTPCP11686 197 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 P2RY2P41231 377 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 POLR2GP62487 172 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS35-201ENST00000299138 ZNF816Q0VGE8 651 aaPredicted RBP5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM74A3Q4VXF1 159 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 GLIPR1L1Q6UWM5 242 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 ATG4DQ86TL0 474 aaPredicted RBP5.68□□□□□ -1.5
VPS35-201ENST00000299138 NR2C2APQ86WQ0 139 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 ZNF511Q8NB15 262 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 RHBDD1Q8TEB9 315 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 OR2A5Q96R48 311 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 HSPB9Q9BQS6 159 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 CA10Q9NS85 328 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FRG2CA6NGY1 282 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 SLC17A3O00476 420 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 MT-ND6P03923 174 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 TYMSP04818 313 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 IGHV4-34P06331 123 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PGA3P0DJD8 388 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 ICAM2P13598 275 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 MAS1LP35410 378 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 METAP1P53582 386 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 C12orf54Q6X4T0 127 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 VN1R4Q7Z5H5 301 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 HOGA1Q86XE5 327 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 OR13C6PQ8NH95 151 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 TMEM242Q9NWH2 141 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 B9D1Q9UPM9 204 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 SHROOM3Q8TF72 1996 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A10PA6NDY2 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A18PA6NE21 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A16PA6NEW6 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A20PA6NIJ5 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A8PA6NJQ4 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A7PA6NKC0 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A22PA8MWA6 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A12PA8MX19 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A5PA8MXJ8 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A23PA8MXZ1 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 EIF1BO60739 113 aaKnown RBP5.68□□□□□ -1.5
VPS35-201ENST00000299138 ACTL6AO96019 429 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 APCSP02743 223 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 GRPP07492 148 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 ANKRD34CP0C6C1 535 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A15PP0C7V4 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A13PP0C7W8 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A14PP0C7W9 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FAM90A24PP0C7X0 464 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 EIF1P41567 113 aaKnown RBP5.68□□□□□ -1.5
VPS35-201ENST00000299138 IER3P46695 156 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 LGALS4P56470 323 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 H2BFSP57053 126 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 DEFB103AP81534 67 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 FUT7Q11130 342 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 RFLNAQ6ZTI6 216 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 NIT1Q86X76 327 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 NUBPLQ8TB37 319 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 PHOSPHO2Q8TCD6 241 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 WBP1Q96G27 269 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 NPFFR1Q9GZQ6 430 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 GPR132Q9UNW8 380 aa5.68□□□□□ -1.5
VPS35-201ENST00000299138 TRAV21A0A0B4J279 112 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms