RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 ZBTB44Q8NCP5 570 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 NFAM1Q8NET5 270 aaPredicted RBP16.6■□□□□ 0.25
PTPRE-201ENST00000254667 OR10G4Q8NGN3 311 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 OR10G9Q8NGN4 311 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 OR10G7Q8NGN6 311 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 MIXL1Q9H2W2 232 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 OR2W1Q9Y3N9 320 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 POMT1Q9Y6A1 747 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 TMEM91Q6ZNR0 172 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 FAM214BQ7L5A3 538 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 TMEM251Q8N6I4 163 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 DHRS9Q9BPW9 319 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 PIPOXQ9P0Z9 390 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 FAM181AQ8N9Y4 354 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 PRNDQ9UKY0 176 aa16.6■□□□□ 0.25
PTPRE-201ENST00000254667 LGALS7P47929 136 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 TMEM241Q24JQ0 296 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 NHLRC2Q8NBF2 726 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 SLC35B3Q9H1N7 401 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 SLC31A2O15432 143 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 IGF2P01344 180 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 ZFP36L2P47974 494 aaKnown RBP16.59■□□□□ 0.25
PTPRE-201ENST00000254667 TGIF2LYQ8IUE0 185 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 TGIF2LXQ8IUE1 241 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 GAPTQ8N292 157 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 CCL21O00585 134 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 LSM11P83369 360 aaKnown RBP eCLIP16.59■□□□□ 0.25
PTPRE-201ENST00000254667 RNF122Q9H9V4 155 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 F2RL2O00254 374 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 UPK3AO75631 287 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 TMEM33P57088 247 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 POLR2GP62487 172 aaKnown RBP eCLIP16.59■□□□□ 0.25
PTPRE-201ENST00000254667 PDZD11Q5EBL8 140 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 TMEM65Q6PI78 240 aa16.59■□□□□ 0.25
PTPRE-201ENST00000254667 CDS2O95674 445 aa16.58■□□□□ 0.25
PTPRE-201ENST00000254667 HLA-GP17693 338 aa16.58■□□□□ 0.25
PTPRE-201ENST00000254667 FSTP19883 344 aa16.58■□□□□ 0.25
PTPRE-201ENST00000254667 MYPOPQ86VE0 399 aaPredicted RBP16.58■□□□□ 0.25
PTPRE-201ENST00000254667 SLC24A4Q8NFF2 622 aa16.58■□□□□ 0.25
PTPRE-201ENST00000254667 ADAT3Q96EY9 351 aaPredicted RBP16.58■□□□□ 0.25
PTPRE-201ENST00000254667 ATP5SQ99766 215 aa16.58■□□□□ 0.25
PTPRE-201ENST00000254667 NIT2Q9NQR4 276 aa16.58■□□□□ 0.25
PTPRE-201ENST00000254667 ZNF737O75373 536 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 ADAP1O75689 374 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 TTRP02766 147 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 CRHP06850 196 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 TMEM167BQ9NRX6 74 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 SMIM10L1P0DMW3 83 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 SMIM10Q96HG1 83 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 UBTD1Q9HAC8 227 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 PRR33A8MZF0 331 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 GNG4P50150 75 aa16.58■□□□□ 0.24
PTPRE-201ENST00000254667 TDRD15B5MCY1 1934 aaKnown RBP16.58■□□□□ 0.24
PTPRE-201ENST00000254667 SP9P0CG40 484 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 HOGA1Q86XE5 327 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 DTD1Q8TEA8 209 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 SLC2A9Q9NRM0 540 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 MMP24Q9Y5R2 645 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 DUXBA0A1W2PPF3 345 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 CLDN34H7C241 214 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 HOXB1P14653 301 aaPredicted RBP16.57■□□□□ 0.24
PTPRE-201ENST00000254667 KLF9Q13886 244 aaPredicted RBP16.57■□□□□ 0.24
PTPRE-201ENST00000254667 RTP5Q14D33 572 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 WNK3Q9BYP7 1800 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 NQO2P16083 231 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 CCL28Q9NRJ3 127 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 OR1A1Q9P1Q5 309 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 SPAG17Q6Q759 2223 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 SLC23A3Q6PIS1 610 aa16.57■□□□□ 0.24
PTPRE-201ENST00000254667 FAM103A1Q9BTL3 118 aaKnown RBP16.57■□□□□ 0.24
PTPRE-201ENST00000254667 RPS4Y1P22090 263 aaKnown RBP16.56■□□□□ 0.24
PTPRE-201ENST00000254667 FAM219AQ8IW50 185 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 ZPLD1Q8TCW7 415 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 RASL11BQ9BPW5 248 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 CHRNA10Q9GZZ6 450 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 PIGYQ3MUY2 71 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 TECRQ9NZ01 308 aaKnown RBP16.56■□□□□ 0.24
PTPRE-201ENST00000254667 KIR3DL2P43630 455 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 RBM11P57052 281 aaKnown RBP16.56■□□□□ 0.24
PTPRE-201ENST00000254667 INPP5JQ15735 1006 aaPredicted RBP16.56■□□□□ 0.24
PTPRE-201ENST00000254667 ZNF260Q3ZCT1 412 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 OR2J1Q9GZK6 312 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 TMPRSS5Q9H3S3 457 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 MANBALQ9NQG1 85 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 BRWD3Q6RI45 1802 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 A0A1W2PNV4 684 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 PSG4Q00888 419 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 ADIPOR1Q96A54 375 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 CLN8Q9UBY8 286 aa16.56■□□□□ 0.24
PTPRE-201ENST00000254667 A0A1B0GU03 582 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 MS4A18H0YCH9 400 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 CSF2RBP32927 897 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 TPPP2P59282 170 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 MS4A18Q3C1V0 323 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 C4orf17Q53FE4 359 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 TMEM88Q6PEY1 159 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 FLYWCH2Q96CP2 140 aaKnown RBP16.55■□□□□ 0.24
PTPRE-201ENST00000254667 HS3ST3B1Q9Y662 390 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 HSBP1O75506 76 aa16.55■□□□□ 0.24
PTPRE-201ENST00000254667 IGHV3-13P01766 116 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms