RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SALL1Q9NSC2 1324 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 LAMB1P07942 1786 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 ATP2B4P23634 1241 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 STYK1Q6J9G0 422 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 ZNF589Q86UQ0 364 aaPredicted RBP12.67□□□□□ -0.38
CLN3-248ENST00000636355 VPS37DQ86XT2 251 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 ZGPATQ8N5A5 531 aaKnown RBP12.67□□□□□ -0.38
CLN3-248ENST00000636355 MASTLQ96GX5 879 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 ANTXR1Q9H6X2 564 aa12.67□□□□□ -0.38
CLN3-248ENST00000636355 PPEF1O14829 653 aaPredicted RBP12.66□□□□□ -0.38
CLN3-248ENST00000636355 PDE6AP16499 860 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 PSMA5P28066 241 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 HIBADHP31937 336 aaKnown RBP12.66□□□□□ -0.38
CLN3-248ENST00000636355 IFFO2Q5TF58 517 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 ZNF804AQ7Z570 1209 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 SP8Q8IXZ3 490 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 FAM84BQ96KN1 310 aaPredicted RBP12.66□□□□□ -0.38
CLN3-248ENST00000636355 ANKIB1Q9P2G1 1089 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 SNX14Q9Y5W7 946 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 NDUFB9Q9Y6M9 179 aa12.66□□□□□ -0.38
CLN3-248ENST00000636355 PSME4Q14997 1843 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 BCAMP50895 628 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 PTH1RQ03431 593 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 WASHC4Q2M389 1173 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 GRIPAP1Q4V328 841 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 CREB3L3Q68CJ9 461 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 PI16Q6UXB8 463 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 PIH1D3Q9NQM4 214 aaKnown RBP12.65□□□□□ -0.38
CLN3-248ENST00000636355 CTNNA3Q9UI47 895 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 GGA1Q9UJY5 639 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 PALD1Q9ULE6 856 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 ATP6V0A2Q9Y487 856 aa12.65□□□□□ -0.38
CLN3-248ENST00000636355 BRCA1P38398 1863 aaKnown RBP12.65□□□□□ -0.38
CLN3-248ENST00000636355 TCRBV5S4A2TA0A5A2 114 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 SLC27A2O14975 620 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 IDH1O75874 414 aaKnown RBP12.64□□□□□ -0.39
CLN3-248ENST00000636355 HMGB1P09429 215 aaKnown RBP12.64□□□□□ -0.39
CLN3-248ENST00000636355 GNAT2P19087 354 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 SLC9C2Q5TAH2 1124 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 CERS3Q8IU89 383 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 CCDC24Q8N4L8 307 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 OSBP2Q969R2 916 aa12.64□□□□□ -0.39
CLN3-248ENST00000636355 TMX4Q9H1E5 349 aaPredicted RBP12.64□□□□□ -0.39
CLN3-248ENST00000636355 CIZ1Q9ULV3 898 aaPredicted RBP12.64□□□□□ -0.39
CLN3-248ENST00000636355 ZNF646O15015 1829 aaPredicted RBP12.63□□□□□ -0.39
CLN3-248ENST00000636355 SLX4Q8IY92 1834 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 DCAF8L1A6NGE4 600 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 GPAA1O43292 621 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 HSPD1P10809 573 aaKnown RBP12.63□□□□□ -0.39
CLN3-248ENST00000636355 GYG1P46976 350 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 SPTY2D1Q68D10 685 aaPredicted RBP12.63□□□□□ -0.39
CLN3-248ENST00000636355 CC2D2BQ6DHV5 1058 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 PRPF40BQ6NWY9 871 aaKnown RBP12.63□□□□□ -0.39
CLN3-248ENST00000636355 WDR66Q8TBY9 1149 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 ALDH8A1Q9H2A2 487 aaPredicted RBP12.63□□□□□ -0.39
CLN3-248ENST00000636355 ZSWIM6Q9HCJ5 1215 aa12.63□□□□□ -0.39
CLN3-248ENST00000636355 ZNF532Q9HCE3 1301 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 SNED1Q8TER0 1413 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 FOCADQ5VW36 1801 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 H0YIN7 160 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 M0R2C6 588 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 SNAP23O00161 211 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 UFL1O94874 794 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 NEK4P51957 841 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 ANKRD1Q15327 319 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 VPS53Q5VIR6 699 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 TDRD7Q8NHU6 1098 aaKnown RBP12.62□□□□□ -0.39
CLN3-248ENST00000636355 CNKSR1Q969H4 720 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 TTC14Q96N46 770 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 CYP46A1Q9Y6A2 500 aa12.62□□□□□ -0.39
CLN3-248ENST00000636355 DDX60LQ5H9U9 1706 aaKnown RBP12.62□□□□□ -0.39
CLN3-248ENST00000636355 MYH2Q9UKX2 1941 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 IL1R1P14778 569 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 GPSM2P81274 684 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 R3HDM1Q15032 1099 aaKnown RBP12.61□□□□□ -0.39
CLN3-248ENST00000636355 ALX1Q15699 326 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 MSL1Q68DK7 614 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 RASEFQ8IZ41 740 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 AIDAQ96BJ3 306 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 INTS4Q96HW7 963 aaKnown RBP12.61□□□□□ -0.39
CLN3-248ENST00000636355 SEC62Q99442 399 aaKnown RBP12.61□□□□□ -0.39
CLN3-248ENST00000636355 LRP2BPQ9P2M1 347 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 WWC3Q9ULE0 1092 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 NAV1Q8NEY1 1877 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 WDR19Q8NEZ3 1342 aa12.61□□□□□ -0.39
CLN3-248ENST00000636355 CDK5RAP2Q96SN8 1893 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 FRAT2O75474 233 aaPredicted RBP12.6□□□□□ -0.39
CLN3-248ENST00000636355 CD2BP2O95400 341 aaKnown RBP12.6□□□□□ -0.39
CLN3-248ENST00000636355 HSP90AA1P07900 732 aaKnown RBP12.6□□□□□ -0.39
CLN3-248ENST00000636355 CASTP20810 708 aaKnown RBP12.6□□□□□ -0.39
CLN3-248ENST00000636355 IMMTQ16891 758 aaKnown RBP12.6□□□□□ -0.39
CLN3-248ENST00000636355 CCDC129Q6ZRS4 1044 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 RUFY3Q7L099 469 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 C2CD5Q86YS7 1000 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 MAGEB6Q8N7X4 407 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 TBC1D16Q8TBP0 767 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 TBC1D22AQ8WUA7 517 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 JAKMIP1Q96N16 626 aaKnown RBP12.6□□□□□ -0.39
CLN3-248ENST00000636355 COA1Q9GZY4 146 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 PUS7LQ9H0K6 701 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms