RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 PUS3Q9BZE2 481 aaKnown RBP15.77■□□□□ 0.12
PNKP-217ENST00000625216 PPP4R2Q9NY27 417 aa15.77■□□□□ 0.12
PNKP-217ENST00000625216 ADM5C9JUS6 153 aa15.76■□□□□ 0.11
PNKP-217ENST00000625216 SASH1O94885 1247 aa15.76■□□□□ 0.11
PNKP-217ENST00000625216 UBTFL1P0CB47 393 aaPredicted RBP15.76■□□□□ 0.11
PNKP-217ENST00000625216 MS4A1P11836 297 aa15.76■□□□□ 0.11
PNKP-217ENST00000625216 MVPQ14764 893 aaKnown RBP15.76■□□□□ 0.11
PNKP-217ENST00000625216 GBA2Q9HCG7 927 aaPredicted RBP15.76■□□□□ 0.11
PNKP-217ENST00000625216 ASTN2O75129 1339 aaPredicted RBP15.75■□□□□ 0.11
PNKP-217ENST00000625216 WNT10BO00744 389 aa15.75■□□□□ 0.11
PNKP-217ENST00000625216 HIBADHP31937 336 aaKnown RBP15.75■□□□□ 0.11
PNKP-217ENST00000625216 CTCFP49711 727 aaPredicted RBP15.75■□□□□ 0.11
PNKP-217ENST00000625216 HUNKP57058 714 aa15.75■□□□□ 0.11
PNKP-217ENST00000625216 NBPF9Q3BBW0 867 aa15.75■□□□□ 0.11
PNKP-217ENST00000625216 COL13A1Q5TAT6 717 aaPredicted RBP15.75■□□□□ 0.11
PNKP-217ENST00000625216 KIAA0825Q8IV33 1275 aa15.75■□□□□ 0.11
PNKP-217ENST00000625216 FAM205AQ6ZU69 1335 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 FOXN1O15353 648 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 PDE8BO95263 885 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 FKBP1BP68106 108 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 METTL24Q5JXM2 366 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 DLK2Q6UY11 383 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 TDRD7Q8NHU6 1098 aaKnown RBP15.74■□□□□ 0.11
PNKP-217ENST00000625216 CDCA5Q96FF9 252 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 FAM84BQ96KN1 310 aaPredicted RBP15.74■□□□□ 0.11
PNKP-217ENST00000625216 PRDM10Q9NQV6 1147 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 FBXO3Q9UK99 471 aa15.74■□□□□ 0.11
PNKP-217ENST00000625216 GRM1Q13255 1194 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 LRRC24Q50LG9 513 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 CAVIN4Q5BKX8 364 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 INTS3Q68E01 1043 aaKnown RBP15.73■□□□□ 0.11
PNKP-217ENST00000625216 ITPRIPQ8IWB1 547 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 CERS5Q8N5B7 392 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 MTMR14Q8NCE2 650 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 CCDC102AQ96A19 550 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 ZBED3Q96IU2 234 aaPredicted RBP15.73■□□□□ 0.11
PNKP-217ENST00000625216 BEGAINQ9BUH8 593 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 TRPM7Q96QT4 1865 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 PSME4Q14997 1843 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 SPEF2Q9C093 1822 aa15.73■□□□□ 0.11
PNKP-217ENST00000625216 EYA2O00167 538 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 GYG1P46976 350 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 RFX5P48382 616 aaPredicted RBP15.72■□□□□ 0.11
PNKP-217ENST00000625216 NOGQ13253 232 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 DLGAP5Q15398 846 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 B4GALNT3Q6L9W6 998 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 RGMBQ6NW40 437 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 FBXO33Q7Z6M2 555 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 VPS37DQ86XT2 251 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 VGLL2Q8N8G2 317 aa15.72■□□□□ 0.11
PNKP-217ENST00000625216 GNAI3P08754 354 aa15.71■□□□□ 0.11
PNKP-217ENST00000625216 PTPN12Q05209 780 aaKnown RBP15.71■□□□□ 0.11
PNKP-217ENST00000625216 APOBEC3FQ8IUX4 373 aaKnown RBP15.71■□□□□ 0.11
PNKP-217ENST00000625216 CA12O43570 354 aa15.7■□□□□ 0.1
PNKP-217ENST00000625216 AOC2O75106 756 aa15.7■□□□□ 0.1
PNKP-217ENST00000625216 IFIT1P09914 478 aaKnown RBP15.7■□□□□ 0.1
PNKP-217ENST00000625216 NF2P35240 595 aa15.7■□□□□ 0.1
PNKP-217ENST00000625216 PUM3Q15397 648 aaKnown RBP15.7■□□□□ 0.1
PNKP-217ENST00000625216 TNS4Q8IZW8 715 aa15.7■□□□□ 0.1
PNKP-217ENST00000625216 KLHDC4Q8TBB5 520 aa15.7■□□□□ 0.1
PNKP-217ENST00000625216 DDX19BQ9UMR2 479 aa15.7■□□□□ 0.1
PNKP-217ENST00000625216 MYO1BO43795 1136 aa15.69■□□□□ 0.1
PNKP-217ENST00000625216 CIAO1O76071 339 aa15.69■□□□□ 0.1
PNKP-217ENST00000625216 FGFR2P21802 821 aa15.69■□□□□ 0.1
PNKP-217ENST00000625216 ZNF157P51786 506 aaPredicted RBP15.69■□□□□ 0.1
PNKP-217ENST00000625216 MFSD14BQ5SR56 506 aa15.69■□□□□ 0.1
PNKP-217ENST00000625216 TBC1D22AQ8WUA7 517 aa15.69■□□□□ 0.1
PNKP-217ENST00000625216 LPIN2Q92539 896 aa15.69■□□□□ 0.1
PNKP-217ENST00000625216 LRRFIP2Q9Y608 721 aaKnown RBP15.69■□□□□ 0.1
PNKP-217ENST00000625216 F8W031 263 aaPredicted RBP15.68■□□□□ 0.1
PNKP-217ENST00000625216 FRAT2O75474 233 aaPredicted RBP15.68■□□□□ 0.1
PNKP-217ENST00000625216 CFAP100Q494V2 611 aa15.68■□□□□ 0.1
PNKP-217ENST00000625216 MEIS3Q99687 375 aa15.68■□□□□ 0.1
PNKP-217ENST00000625216 CEP126Q9P2H0 1117 aa15.68■□□□□ 0.1
PNKP-217ENST00000625216 SERPINA10Q9UK55 444 aa15.68■□□□□ 0.1
PNKP-217ENST00000625216 SPDYE2BA6NHP3 402 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 FAM155AB1AL88 458 aaPredicted RBP15.67■□□□□ 0.1
PNKP-217ENST00000625216 SPDYE6P0CI01 402 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 HSPA8P11142 646 aaKnown RBP15.67■□□□□ 0.1
PNKP-217ENST00000625216 SLC5A1P13866 664 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 IL15P40933 162 aaPredicted RBP15.67■□□□□ 0.1
PNKP-217ENST00000625216 LBX1P52954 281 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 ATG9AQ7Z3C6 839 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 REM2Q8IYK8 340 aaPredicted RBP15.67■□□□□ 0.1
PNKP-217ENST00000625216 COPRSQ9NQ92 184 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 JAG2Q9Y219 1238 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 PPP2R3BQ9Y5P8 575 aa15.67■□□□□ 0.1
PNKP-217ENST00000625216 BCAMP50895 628 aa15.66■□□□□ 0.1
PNKP-217ENST00000625216 RBM5P52756 815 aaKnown RBP eCLIP15.66■□□□□ 0.1
PNKP-217ENST00000625216 HDLBPQ00341 1268 aaKnown RBP15.66■□□□□ 0.1
PNKP-217ENST00000625216 MTX1Q13505 466 aa15.66■□□□□ 0.1
PNKP-217ENST00000625216 CCDC136Q96JN2 1154 aa15.66■□□□□ 0.1
PNKP-217ENST00000625216 PRMT6Q96LA8 375 aaPredicted RBP15.66■□□□□ 0.1
PNKP-217ENST00000625216 MRIQ9BWK5 157 aa15.66■□□□□ 0.1
PNKP-217ENST00000625216 DEFB129Q9H1M3 183 aa15.66■□□□□ 0.1
PNKP-217ENST00000625216 TTF2Q9UNY4 1162 aaKnown RBP15.66■□□□□ 0.1
PNKP-217ENST00000625216 SUGT1Q9Y2Z0 365 aa15.66■□□□□ 0.1
PNKP-217ENST00000625216 ZBTB7BO15156 539 aaPredicted RBP15.65■□□□□ 0.1
PNKP-217ENST00000625216 SLC10A3P09131 477 aa15.65■□□□□ 0.1
PNKP-217ENST00000625216 PRAMEF18Q5VWM3 479 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms