RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 GRM8O00222 908 aa14.93□□□□□ -0.02
CLIP3-204ENST00000590559 NF2P35240 595 aa14.93□□□□□ -0.02
CLIP3-204ENST00000590559 KCNJ4P48050 445 aa14.93□□□□□ -0.02
CLIP3-204ENST00000590559 KAZALD1Q96I82 304 aa14.93□□□□□ -0.02
CLIP3-204ENST00000590559 SALL2Q9Y467 1007 aaPredicted RBP14.93□□□□□ -0.02
CLIP3-204ENST00000590559 OTOFQ9HC10 1997 aa14.93□□□□□ -0.02
CLIP3-204ENST00000590559 PDE4DIPQ5VU43 2346 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 SLC34A2O95436 690 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 ZNF296Q8WUU4 475 aaPredicted RBP14.92□□□□□ -0.02
CLIP3-204ENST00000590559 ZNF594Q96JF6 807 aaPredicted RBP14.92□□□□□ -0.02
CLIP3-204ENST00000590559 DEFB129Q9H1M3 183 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 UTYO14607 1347 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 AOX1Q06278 1338 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 FAM205AQ6ZU69 1335 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 ZNF521Q96K83 1311 aa14.92□□□□□ -0.02
CLIP3-204ENST00000590559 SPDYE2BA6NHP3 402 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 ALDH1L1O75891 902 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 TBC1D8O95759 1140 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 SPDYE6P0CI01 402 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 TTLL12Q14166 644 aaPredicted RBP14.91□□□□□ -0.02
CLIP3-204ENST00000590559 DLGAP5Q15398 846 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 SPRYD7Q5W111 196 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 ARMC9Q7Z3E5 817 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 ZNF804AQ7Z570 1209 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 PRMT6Q96LA8 375 aaPredicted RBP14.91□□□□□ -0.02
CLIP3-204ENST00000590559 FZD1Q9UP38 647 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 PPP2R3BQ9Y5P8 575 aa14.91□□□□□ -0.02
CLIP3-204ENST00000590559 GPR25O00155 361 aa14.9□□□□□ -0.02
CLIP3-204ENST00000590559 ANP32CO43423 234 aa14.9□□□□□ -0.02
CLIP3-204ENST00000590559 PKN2Q16513 984 aaKnown RBP14.9□□□□□ -0.02
CLIP3-204ENST00000590559 LDHAL6AQ6ZMR3 332 aa14.9□□□□□ -0.02
CLIP3-204ENST00000590559 TDRD7Q8NHU6 1098 aaKnown RBP14.9□□□□□ -0.02
CLIP3-204ENST00000590559 R3HDMLQ9H3Y0 253 aa14.9□□□□□ -0.02
CLIP3-204ENST00000590559 UNCXA6NJT0 531 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 SREBF2Q12772 1141 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 PRKG1Q13976 671 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 UBE4AQ14139 1066 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 CCDC57Q2TAC2 916 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 CFAP100Q494V2 611 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 ANGEL1Q9UNK9 670 aaKnown RBP14.89□□□□□ -0.03
CLIP3-204ENST00000590559 HPS5Q9UPZ3 1129 aa14.89□□□□□ -0.03
CLIP3-204ENST00000590559 SOX10P56693 466 aa14.88□□□□□ -0.03
CLIP3-204ENST00000590559 MKRN3Q13064 507 aaKnown RBP14.88□□□□□ -0.03
CLIP3-204ENST00000590559 SUCLG2Q96I99 432 aa14.88□□□□□ -0.03
CLIP3-204ENST00000590559 FAM84BQ96KN1 310 aaPredicted RBP14.88□□□□□ -0.03
CLIP3-204ENST00000590559 CHMP3Q9Y3E7 222 aa14.88□□□□□ -0.03
CLIP3-204ENST00000590559 RIPOR2Q9Y4F9 1068 aa14.88□□□□□ -0.03
CLIP3-204ENST00000590559 ZNF316A6NFI3 1004 aaPredicted RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 F8W031 263 aaPredicted RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 NBPF7P0C2Y1 421 aaPredicted RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 ZBTB48P10074 688 aaPredicted RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 INHBEP58166 350 aa14.87□□□□□ -0.03
CLIP3-204ENST00000590559 RABL6Q3YEC7 729 aaPredicted RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 CLMNQ96JQ2 1002 aa14.87□□□□□ -0.03
CLIP3-204ENST00000590559 PUS3Q9BZE2 481 aaKnown RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 SRCIN1Q9C0H9 1055 aa14.87□□□□□ -0.03
CLIP3-204ENST00000590559 CNNM1Q9NRU3 951 aa14.87□□□□□ -0.03
CLIP3-204ENST00000590559 C9orf78Q9NZ63 289 aaPredicted RBP14.87□□□□□ -0.03
CLIP3-204ENST00000590559 CLRN2A0PK11 232 aa14.86□□□□□ -0.03
CLIP3-204ENST00000590559 USP2O75604 605 aaPredicted RBP14.86□□□□□ -0.03
CLIP3-204ENST00000590559 NBPF12Q5TAG4 269 aaPredicted RBP14.86□□□□□ -0.03
CLIP3-204ENST00000590559 WNK4Q96J92 1243 aa14.86□□□□□ -0.03
CLIP3-204ENST00000590559 JAG2Q9Y219 1238 aa14.86□□□□□ -0.03
CLIP3-204ENST00000590559 RBBP6Q7Z6E9 1792 aaKnown RBP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 MANSC4A6NHS7 340 aaPredicted RBP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 IGF2BP3O00425 579 aaKnown RBP eCLIP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 MYO1BO43795 1136 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 PPP1R12BO60237 982 aaPredicted RBP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 PLIN1O60240 522 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 FKTNO75072 461 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 ALDH1A1P00352 501 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 HIBADHP31937 336 aaKnown RBP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 GJA5P36382 358 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 GYG1P46976 350 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 RASA3Q14644 834 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 SUPT20HL1Q3ZLR7 823 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 SPDYE2Q495Y8 402 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 FBXO46Q6PJ61 603 aaPredicted RBP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 FBXO33Q7Z6M2 555 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 IFNL1Q8IU54 200 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 MRPL50Q8N5N7 158 aaKnown RBP14.85□□□□□ -0.03
CLIP3-204ENST00000590559 ANKRD44Q8N8A2 993 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 VGLL2Q8N8G2 317 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 SLC10A4Q96EP9 437 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 TEPSINQ96N21 525 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 SERPINA10Q9UK55 444 aa14.85□□□□□ -0.03
CLIP3-204ENST00000590559 TESPA1A2RU30 521 aaPredicted RBP14.84□□□□□ -0.03
CLIP3-204ENST00000590559 TAF7LQ5H9L4 462 aa14.84□□□□□ -0.03
CLIP3-204ENST00000590559 MFSD14BQ5SR56 506 aa14.84□□□□□ -0.03
CLIP3-204ENST00000590559 SLC4A10Q6U841 1118 aa14.84□□□□□ -0.03
CLIP3-204ENST00000590559 FAM9BQ8IZU0 186 aa14.84□□□□□ -0.03
CLIP3-204ENST00000590559 BICC1Q9H694 974 aaKnown RBP14.84□□□□□ -0.03
CLIP3-204ENST00000590559 ZNF70Q9UC06 446 aaPredicted RBP14.84□□□□□ -0.03
CLIP3-204ENST00000590559 MROH5Q6ZUA9 1318 aa14.84□□□□□ -0.03
CLIP3-204ENST00000590559 MYH13Q9UKX3 1938 aa14.84□□□□□ -0.03
CLIP3-204ENST00000590559 ZEB1P37275 1124 aaPredicted RBP14.83□□□□□ -0.04
CLIP3-204ENST00000590559 GRIK5Q16478 980 aa14.83□□□□□ -0.04
CLIP3-204ENST00000590559 VEZTQ9HBM0 779 aa14.83□□□□□ -0.04
CLIP3-204ENST00000590559 TTF2Q9UNY4 1162 aaKnown RBP14.83□□□□□ -0.04
CLIP3-204ENST00000590559 IREB2P48200 963 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms