RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 NOB1Q9ULX3 412 aaKnown RBP23.4■■□□□ 1.34
SMPD3-209ENST00000567223 HDAC5Q9UQL6 1122 aa23.4■■□□□ 1.34
SMPD3-209ENST00000567223 FAM155AB1AL88 458 aaPredicted RBP23.39■■□□□ 1.33
SMPD3-209ENST00000567223 HSPA8P11142 646 aaKnown RBP23.39■■□□□ 1.33
SMPD3-209ENST00000567223 TNS4Q8IZW8 715 aa23.39■■□□□ 1.33
SMPD3-209ENST00000567223 BEGAINQ9BUH8 593 aa23.39■■□□□ 1.33
SMPD3-209ENST00000567223 FBXO3Q9UK99 471 aa23.39■■□□□ 1.33
SMPD3-209ENST00000567223 ARAP2Q8WZ64 1704 aa23.39■■□□□ 1.33
SMPD3-209ENST00000567223 PDE8BO95263 885 aa23.38■■□□□ 1.33
SMPD3-209ENST00000567223 HIBADHP31937 336 aaKnown RBP23.38■■□□□ 1.33
SMPD3-209ENST00000567223 APOBEC3FQ8IUX4 373 aaKnown RBP23.38■■□□□ 1.33
SMPD3-209ENST00000567223 FAM84BQ96KN1 310 aaPredicted RBP23.38■■□□□ 1.33
SMPD3-209ENST00000567223 PLIN1O60240 522 aa23.37■■□□□ 1.33
SMPD3-209ENST00000567223 AOC2O75106 756 aa23.37■■□□□ 1.33
SMPD3-209ENST00000567223 RFX5P48382 616 aaPredicted RBP23.37■■□□□ 1.33
SMPD3-209ENST00000567223 ECM29Q5VYK3 1845 aa23.37■■□□□ 1.33
SMPD3-209ENST00000567223 LRRC24Q50LG9 513 aa23.36■■□□□ 1.33
SMPD3-209ENST00000567223 FBXO33Q7Z6M2 555 aa23.36■■□□□ 1.33
SMPD3-209ENST00000567223 UBTFL1P0CB47 393 aaPredicted RBP23.35■■□□□ 1.33
SMPD3-209ENST00000567223 LBX1P52954 281 aa23.35■■□□□ 1.33
SMPD3-209ENST00000567223 METTL24Q5JXM2 366 aa23.35■■□□□ 1.33
SMPD3-209ENST00000567223 DIEXFQ68CQ4 756 aaKnown RBP23.35■■□□□ 1.33
SMPD3-209ENST00000567223 INTS3Q68E01 1043 aaKnown RBP23.35■■□□□ 1.33
SMPD3-209ENST00000567223 PPP2R3BQ9Y5P8 575 aa23.35■■□□□ 1.33
SMPD3-209ENST00000567223 SLC10A3P09131 477 aa23.34■■□□□ 1.33
SMPD3-209ENST00000567223 PTPN12Q05209 780 aaKnown RBP23.34■■□□□ 1.33
SMPD3-209ENST00000567223 GRM1Q13255 1194 aa23.34■■□□□ 1.33
SMPD3-209ENST00000567223 DLGAP5Q15398 846 aa23.34■■□□□ 1.33
SMPD3-209ENST00000567223 REM2Q8IYK8 340 aaPredicted RBP23.34■■□□□ 1.33
SMPD3-209ENST00000567223 SPDYE2BA6NHP3 402 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 EYA2O00167 538 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 CIAO1O76071 339 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 SPDYE6P0CI01 402 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 FGFR2P21802 821 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 GYG1P46976 350 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 ZNF157P51786 506 aaPredicted RBP23.33■■□□□ 1.33
SMPD3-209ENST00000567223 CAVIN4Q5BKX8 364 aa23.33■■□□□ 1.33
SMPD3-209ENST00000567223 ZBTB22O15209 634 aa23.32■■□□□ 1.32
SMPD3-209ENST00000567223 NF2P35240 595 aa23.32■■□□□ 1.32
SMPD3-209ENST00000567223 PUM3Q15397 648 aaKnown RBP23.32■■□□□ 1.32
SMPD3-209ENST00000567223 MIER1Q8N108 512 aa23.32■■□□□ 1.32
SMPD3-209ENST00000567223 SERPINA10Q9UK55 444 aa23.32■■□□□ 1.32
SMPD3-209ENST00000567223 IPO8O15397 1037 aaKnown RBP23.31■■□□□ 1.32
SMPD3-209ENST00000567223 MYO1BO43795 1136 aa23.31■■□□□ 1.32
SMPD3-209ENST00000567223 MFSD14BQ5SR56 506 aa23.31■■□□□ 1.32
SMPD3-209ENST00000567223 KLHDC4Q8TBB5 520 aa23.31■■□□□ 1.32
SMPD3-209ENST00000567223 TBC1D22AQ8WUA7 517 aa23.31■■□□□ 1.32
SMPD3-209ENST00000567223 SAGE1Q9NXZ1 904 aa23.31■■□□□ 1.32
SMPD3-209ENST00000567223 CFAP100Q494V2 611 aa23.3■■□□□ 1.32
SMPD3-209ENST00000567223 IFIT1P09914 478 aaKnown RBP23.29■■□□□ 1.32
SMPD3-209ENST00000567223 HDLBPQ00341 1268 aaKnown RBP23.29■■□□□ 1.32
SMPD3-209ENST00000567223 ATG9AQ7Z3C6 839 aa23.29■■□□□ 1.32
SMPD3-209ENST00000567223 VPS37DQ86XT2 251 aa23.29■■□□□ 1.32
SMPD3-209ENST00000567223 RASAL3Q86YV0 1011 aa23.29■■□□□ 1.32
SMPD3-209ENST00000567223 LPIN2Q92539 896 aa23.29■■□□□ 1.32
SMPD3-209ENST00000567223 SUGT1Q9Y2Z0 365 aa23.29■■□□□ 1.32
SMPD3-209ENST00000567223 UNCXA6NJT0 531 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 GNAI3P08754 354 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 MTX1Q13505 466 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 PRMT6Q96LA8 375 aaPredicted RBP23.28■■□□□ 1.32
SMPD3-209ENST00000567223 ZIC5Q96T25 663 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 MRIQ9BWK5 157 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 DEFB129Q9H1M3 183 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 COPRSQ9NQ92 184 aa23.28■■□□□ 1.32
SMPD3-209ENST00000567223 MAP3K11Q16584 847 aa23.27■■□□□ 1.32
SMPD3-209ENST00000567223 ATF7IPQ6VMQ6 1270 aa23.27■■□□□ 1.32
SMPD3-209ENST00000567223 MEIS3Q99687 375 aa23.27■■□□□ 1.32
SMPD3-209ENST00000567223 TRIM27P14373 513 aa23.26■■□□□ 1.31
SMPD3-209ENST00000567223 KIF23Q02241 960 aaPredicted RBP23.26■■□□□ 1.31
SMPD3-209ENST00000567223 TTF2Q9UNY4 1162 aaKnown RBP23.26■■□□□ 1.31
SMPD3-209ENST00000567223 SCAF8Q9UPN6 1271 aaKnown RBP23.26■■□□□ 1.31
SMPD3-209ENST00000567223 LRRFIP2Q9Y608 721 aaKnown RBP23.26■■□□□ 1.31
SMPD3-209ENST00000567223 F8W031 263 aaPredicted RBP23.25■■□□□ 1.31
SMPD3-209ENST00000567223 IL15P40933 162 aaPredicted RBP23.25■■□□□ 1.31
SMPD3-209ENST00000567223 LDLRAD1Q5T700 205 aa23.25■■□□□ 1.31
SMPD3-209ENST00000567223 PRAMEF18Q5VWM3 479 aa23.25■■□□□ 1.31
SMPD3-209ENST00000567223 ARMC9Q7Z3E5 817 aa23.25■■□□□ 1.31
SMPD3-209ENST00000567223 SLC5A1P13866 664 aa23.24■■□□□ 1.31
SMPD3-209ENST00000567223 HNRNPUQ00839 825 aaKnown RBP eCLIP23.24■■□□□ 1.31
SMPD3-209ENST00000567223 TNFAIP1Q13829 316 aa23.24■■□□□ 1.31
SMPD3-209ENST00000567223 SPDYE2Q495Y8 402 aa23.24■■□□□ 1.31
SMPD3-209ENST00000567223 JAG2Q9Y219 1238 aa23.24■■□□□ 1.31
SMPD3-209ENST00000567223 SSC5DA1L4H1 1573 aa23.23■■□□□ 1.31
SMPD3-209ENST00000567223 BCAMP50895 628 aa23.23■■□□□ 1.31
SMPD3-209ENST00000567223 CSRNP1Q96S65 589 aa23.23■■□□□ 1.31
SMPD3-209ENST00000567223 PCDHAC2Q9Y5I4 1007 aa23.23■■□□□ 1.31
SMPD3-209ENST00000567223 MAST3O60307 1309 aa23.23■■□□□ 1.31
SMPD3-209ENST00000567223 ZBED9Q6R2W3 1325 aa23.23■■□□□ 1.31
SMPD3-209ENST00000567223 LAMB1P07942 1786 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 UBE2Q2LH0YL09 131 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 BCAR3O75815 825 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 CRKP46108 304 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 SUPT20HL1Q3ZLR7 823 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 MOB2Q70IA6 237 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 CEP126Q9P2H0 1117 aa23.22■■□□□ 1.31
SMPD3-209ENST00000567223 FRAT2O75474 233 aaPredicted RBP23.21■■□□□ 1.31
SMPD3-209ENST00000567223 DZIP1LQ8IYY4 767 aaKnown RBP23.21■■□□□ 1.31
SMPD3-209ENST00000567223 AOX1Q06278 1338 aa23.2■■□□□ 1.3
SMPD3-209ENST00000567223 SEMA3EO15041 775 aa23.2■■□□□ 1.3
SMPD3-209ENST00000567223 PPP1R12BO60237 982 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms