RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 MAST3O60307 1309 aa13.19□□□□□ -0.3
CUX1-218ENST00000560541 PDIA3P30101 505 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 FOXO4P98177 505 aa13.19□□□□□ -0.3
CUX1-218ENST00000560541 ZNF622Q969S3 477 aaKnown RBP eCLIP13.19□□□□□ -0.31e-7■■□□□ 13.1
CUX1-218ENST00000560541 LLPHQ9BRT6 129 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 PUS3Q9BZE2 481 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 M0R2C6 588 aa13.19□□□□□ -0.3
CUX1-218ENST00000560541 HMGB1P09429 215 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 IFIT1P09914 478 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 GYS2P54840 703 aa13.19□□□□□ -0.3
CUX1-218ENST00000560541 EXOSC10Q01780 885 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 DHX40Q8IX18 779 aaKnown RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 FEZ1Q99689 392 aa13.19□□□□□ -0.3
CUX1-218ENST00000560541 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.19□□□□□ -0.3
CUX1-218ENST00000560541 V9GYY5 206 aaPredicted RBP13.19□□□□□ -0.3
CUX1-218ENST00000560541 NBPF26B4DH59 902 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 SKILP12757 684 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 NBPF14Q5TI25 921 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 NBPF10Q6P3W6 841 aaKnown RBP13.18□□□□□ -0.3
CUX1-218ENST00000560541 NBPF15Q8N660 670 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 CCDC112Q8NEF3 446 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 PLBD2Q8NHP8 589 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 SDF4Q9BRK5 362 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 ST7Q9NRC1 585 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 ZNF330Q9Y3S2 320 aaPredicted RBP13.18□□□□□ -0.3
CUX1-218ENST00000560541 AFDNP55196 1824 aaKnown RBP13.18□□□□□ -0.3
CUX1-218ENST00000560541 SMTNL1A8MU46 457 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 FAM160A1Q05DH4 1040 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 ZMYM1Q5SVZ6 1142 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 PROSER2Q86WR7 435 aaPredicted RBP13.18□□□□□ -0.3
CUX1-218ENST00000560541 A0A1B0GUL7 405 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 CCDC69A6NI79 296 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 HNRNPH2P55795 449 aaKnown RBP13.18□□□□□ -0.3
CUX1-218ENST00000560541 CEP135Q66GS9 1140 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 DCAF5Q96JK2 942 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 ZNF396Q96N95 335 aaPredicted RBP13.18□□□□□ -0.3
CUX1-218ENST00000560541 HELLSQ9NRZ9 838 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 PCDHA7Q9UN72 937 aa13.18□□□□□ -0.3
CUX1-218ENST00000560541 CARMIL3Q8ND23 1372 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 BIN1O00499 593 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 A1BGP04217 495 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 FDPSP14324 419 aaKnown RBP13.17□□□□□ -0.3
CUX1-218ENST00000560541 WASHC4Q2M389 1173 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 HOMEZQ8IX15 550 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 ENGASEQ8NFI3 743 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 OSBP2Q969R2 916 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 DSCC1Q9BVC3 393 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 SF3A1Q15459 793 aaKnown RBP13.17□□□□□ -0.3
CUX1-218ENST00000560541 FAM43BQ6ZT52 329 aaPredicted RBP13.17□□□□□ -0.3
CUX1-218ENST00000560541 CNKSR2Q8WXI2 1034 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 RFX7Q2KHR2 1363 aa13.17□□□□□ -0.3
CUX1-218ENST00000560541 CTAGE5O15320 804 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 NDUFA8P51970 172 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 CT47A1Q5JQC4 288 aaPredicted RBP13.16□□□□□ -0.3
CUX1-218ENST00000560541 SYTL4Q96C24 671 aaPredicted RBP13.16□□□□□ -0.3
CUX1-218ENST00000560541 ANO10Q9NW15 660 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 CLIC4Q9Y696 253 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 LAMA4Q16363 1823 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 SALL1Q9NSC2 1324 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 RNF113AO15541 343 aaKnown RBP13.16□□□□□ -0.3
CUX1-218ENST00000560541 CAVIN2O95810 425 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 SARM1Q6SZW1 724 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 CEP57L1Q8IYX8 460 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 MRFAP1L1Q96HT8 127 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 CWC25Q9NXE8 425 aaPredicted RBP13.16□□□□□ -0.3
CUX1-218ENST00000560541 PALLDQ8WX93 1383 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 CDC25BP30305 580 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 ADORA1P30542 326 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 DPCR1Q3MIW9 517 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 ISM2Q6H9L7 571 aa13.16□□□□□ -0.3
CUX1-218ENST00000560541 MRPS27Q92552 414 aaKnown RBP13.16□□□□□ -0.3
CUX1-218ENST00000560541 H7C1W4 665 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 STK38Q15208 465 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 AXDND1Q5T1B0 1012 aaPredicted RBP13.15□□□□□ -0.3
CUX1-218ENST00000560541 GORABQ5T7V8 394 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 PI16Q6UXB8 463 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 SCN11AQ9UI33 1791 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 EYA2O00167 538 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 IL15P40933 162 aaPredicted RBP13.15□□□□□ -0.3
CUX1-218ENST00000560541 AGXT2Q9BYV1 514 aa13.15□□□□□ -0.3
CUX1-218ENST00000560541 CCZ1BP86790 482 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 CCZ1P86791 482 aaPredicted RBP13.14□□□□□ -0.31
CUX1-218ENST00000560541 PTPN14Q15678 1187 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 FMR1NBQ8N0W7 255 aaPredicted RBP13.14□□□□□ -0.31
CUX1-218ENST00000560541 YY1AP1Q9H869 796 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 CTNNA3Q9UI47 895 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 ADAMTS7Q9UKP4 1686 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 KLF18A0A0U1RQI7 1052 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 GOLGA8BA8MQT2 603 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 NPHP1O15259 732 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 SMC2O95347 1197 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 RAD51AP2Q09MP3 1159 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 ZRSR1Q15695 479 aaKnown RBP13.14□□□□□ -0.31
CUX1-218ENST00000560541 C8orf76Q96K31 380 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 PAXBP1Q9Y5B6 917 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 ARFGEF2Q9Y6D5 1785 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 SCARF1Q14162 830 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 C10orf67Q8IYJ2 551 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 ZNF274Q96GC6 653 aaPredicted RBP13.14□□□□□ -0.31
CUX1-218ENST00000560541 TSPYL1Q9H0U9 437 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms