RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 SCNN1DP51172 638 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 G3BP1Q13283 466 aaKnown RBP eCLIP15.38■□□□□ 0.05
VPS33A-207ENST00000542790 CEP85Q6P2H3 762 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 USP17L1Q7RTZ2 530 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 RPAP2Q8IXW5 612 aaPredicted RBP15.38■□□□□ 0.05
VPS33A-207ENST00000542790 TAF1DQ9H5J8 278 aaPredicted RBP15.38■□□□□ 0.05
VPS33A-207ENST00000542790 CD209Q9NNX6 404 aa15.38■□□□□ 0.05
VPS33A-207ENST00000542790 HIBADHP31937 336 aaKnown RBP15.37■□□□□ 0.05
VPS33A-207ENST00000542790 EPHX2P34913 555 aa15.37■□□□□ 0.05
VPS33A-207ENST00000542790 CAVIN4Q5BKX8 364 aa15.37■□□□□ 0.05
VPS33A-207ENST00000542790 PNMA8AQ86V59 439 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-207ENST00000542790 LPIN2Q92539 896 aa15.37■□□□□ 0.05
VPS33A-207ENST00000542790 DPF2Q92785 391 aa15.37■□□□□ 0.05
VPS33A-207ENST00000542790 GPRC5DQ9NZD1 345 aa15.37■□□□□ 0.05
VPS33A-207ENST00000542790 SLC5A1P13866 664 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 IL1R1P14778 569 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 FGFR2P21802 821 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 STRIP1Q5VSL9 837 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 RSBN1LQ6PCB5 846 aaPredicted RBP15.36■□□□□ 0.05
VPS33A-207ENST00000542790 VPS37DQ86XT2 251 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 AGBL3Q8NEM8 1001 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 RBM46Q8TBY0 533 aaKnown RBP15.36■□□□□ 0.05
VPS33A-207ENST00000542790 FAM84BQ96KN1 310 aaPredicted RBP15.36■□□□□ 0.05
VPS33A-207ENST00000542790 AKAP2Q9Y2D5 859 aa15.36■□□□□ 0.05
VPS33A-207ENST00000542790 DICER1Q9UPY3 1922 aaKnown RBP15.35■□□□□ 0.05
VPS33A-207ENST00000542790 H7C1D1 291 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 SURF6O75683 361 aaKnown RBP15.35■□□□□ 0.05
VPS33A-207ENST00000542790 SASH1O94885 1247 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 EPS15P42566 896 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 GYG1P46976 350 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 C1QTNF8P60827 252 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 ATP2B3Q16720 1220 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 TTLL5Q6EMB2 1281 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 FBXO33Q7Z6M2 555 aa15.35■□□□□ 0.05
VPS33A-207ENST00000542790 ADARB2Q9NS39 739 aaKnown RBP15.35■□□□□ 0.05
VPS33A-207ENST00000542790 CNOT7Q9UIV1 285 aaKnown RBP15.35■□□□□ 0.05
VPS33A-207ENST00000542790 NOP58Q9Y2X3 529 aaKnown RBP15.35■□□□□ 0.05
VPS33A-207ENST00000542790 WDR90Q96KV7 1748 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 HMMRO75330 724 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 GTF2IP78347 998 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 TFCP2Q12800 502 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 OS9Q13438 667 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-207ENST00000542790 EAPPQ56P03 285 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-207ENST00000542790 DACT2Q5SW24 774 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 USP50Q70EL3 339 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-207ENST00000542790 TDRD7Q8NHU6 1098 aaKnown RBP15.34■□□□□ 0.05
VPS33A-207ENST00000542790 FBXW7Q969H0 707 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 MYO3BQ8WXR4 1341 aa15.34■□□□□ 0.05
VPS33A-207ENST00000542790 FSTL1Q12841 308 aa15.33■□□□□ 0.04
VPS33A-207ENST00000542790 MICALL2Q8IY33 904 aa15.33■□□□□ 0.04
VPS33A-207ENST00000542790 SMC1BQ8NDV3 1235 aa15.33■□□□□ 0.04
VPS33A-207ENST00000542790 CCDC88AQ3V6T2 1871 aa15.33■□□□□ 0.04
VPS33A-207ENST00000542790 FRAT2O75474 233 aaPredicted RBP15.32■□□□□ 0.04
VPS33A-207ENST00000542790 USP17L8P0C7I0 530 aa15.32■□□□□ 0.04
VPS33A-207ENST00000542790 BCAMP50895 628 aa15.32■□□□□ 0.04
VPS33A-207ENST00000542790 HSP90AB4PQ58FF6 505 aa15.32■□□□□ 0.04
VPS33A-207ENST00000542790 LDHDQ86WU2 507 aa15.32■□□□□ 0.04
VPS33A-207ENST00000542790 GMLQ99445 158 aa15.32■□□□□ 0.04
VPS33A-207ENST00000542790 MMP14P50281 582 aa15.31■□□□□ 0.04
VPS33A-207ENST00000542790 TIMM10P62072 90 aa15.31■□□□□ 0.04
VPS33A-207ENST00000542790 FKBP1AP62942 108 aaKnown RBP15.31■□□□□ 0.04
VPS33A-207ENST00000542790 SIRT2Q8IXJ6 389 aa15.31■□□□□ 0.04
VPS33A-207ENST00000542790 OGFOD1Q8N543 542 aa15.31■□□□□ 0.04
VPS33A-207ENST00000542790 TMEM106CQ9BVX2 250 aa15.31■□□□□ 0.04
VPS33A-207ENST00000542790 GNL3LQ9NVN8 582 aaKnown RBP15.31■□□□□ 0.04
VPS33A-207ENST00000542790 ZNF609O15014 1411 aa15.31■□□□□ 0.04
VPS33A-207ENST00000542790 A0A1B0GUL7 405 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 POTEJP0CG39 1038 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 ZNF280AP59817 542 aaPredicted RBP15.3■□□□□ 0.04
VPS33A-207ENST00000542790 FAM205AQ6ZU69 1335 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 ZNF467Q7Z7K2 595 aaPredicted RBP15.3■□□□□ 0.04
VPS33A-207ENST00000542790 ERC1Q8IUD2 1116 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 NEUROD6Q96NK8 337 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 MXD3Q9BW11 206 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 SPEF2Q9C093 1822 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 GPR108Q9NPR9 543 aa15.3■□□□□ 0.04
VPS33A-207ENST00000542790 SUPT16HQ9Y5B9 1047 aaKnown RBP15.3■□□□□ 0.04
VPS33A-207ENST00000542790 SHTN1A0MZ66 631 aa15.29■□□□□ 0.04
VPS33A-207ENST00000542790 SAMD7Q7Z3H4 446 aa15.29■□□□□ 0.04
VPS33A-207ENST00000542790 ZC3H15Q8WU90 426 aaKnown RBP15.29■□□□□ 0.04
VPS33A-207ENST00000542790 CRBNQ96SW2 442 aa15.29■□□□□ 0.04
VPS33A-207ENST00000542790 EXOC6BQ9Y2D4 811 aa15.29■□□□□ 0.04
VPS33A-207ENST00000542790 TBC1D10BQ4KMP7 808 aaPredicted RBP15.28■□□□□ 0.04
VPS33A-207ENST00000542790 MFSD14BQ5SR56 506 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 GORABQ5T7V8 394 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 RBM26Q5T8P6 1007 aaKnown RBP15.28■□□□□ 0.04
VPS33A-207ENST00000542790 KIAA0825Q8IV33 1275 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 TBC1D22AQ8WUA7 517 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 XAGE2Q96GT9 111 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 HDAC9Q9UKV0 1011 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 IQSEC3Q9UPP2 1182 aaPredicted RBP15.28■□□□□ 0.04
VPS33A-207ENST00000542790 JAG2Q9Y219 1238 aa15.28■□□□□ 0.04
VPS33A-207ENST00000542790 SEMA3EO15041 775 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 RAB11FIP3O75154 756 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 ADORA1P30542 326 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 HIRAP54198 1017 aaPredicted RBP15.27■□□□□ 0.04
VPS33A-207ENST00000542790 CHAF1AQ13111 956 aaPredicted RBP15.27■□□□□ 0.04
VPS33A-207ENST00000542790 AAMPQ13685 434 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 CCDC102BQ68D86 513 aa15.27■□□□□ 0.04
VPS33A-207ENST00000542790 CERS5Q8N5B7 392 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms