RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ZNF165P49910 485 aa11.85□□□□□ -0.51
MCF2-209ENST00000520602 GLIPR1L2Q4G1C9 344 aa11.85□□□□□ -0.51
MCF2-209ENST00000520602 LPIN2Q92539 896 aa11.85□□□□□ -0.51
MCF2-209ENST00000520602 BIN1O00499 593 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 ZBTB43O43298 467 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 PDE8BO95263 885 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 XBP1P17861 261 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 FAM182BQ5T319 152 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 TTC6Q86TZ1 520 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 JMYQ8N9B5 988 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 SOS2Q07890 1332 aaPredicted RBP11.84□□□□□ -0.51
MCF2-209ENST00000520602 FILIP1Q7Z7B0 1213 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 ALG1Q9BT22 464 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 SMC2O95347 1197 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 SCRN1Q12765 414 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 ANO6Q4KMQ2 910 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 ISM2Q6H9L7 571 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 LEO1Q8WVC0 666 aaPredicted RBP11.84□□□□□ -0.51
MCF2-209ENST00000520602 NLRP3Q96P20 1036 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 ISCA1Q9BUE6 129 aa11.84□□□□□ -0.51
MCF2-209ENST00000520602 CDCA7Q9BWT1 371 aaPredicted RBP11.84□□□□□ -0.51
MCF2-209ENST00000520602 IL6STP40189 918 aaPredicted RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 CLEC17AQ6ZS10 378 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 MYL10Q9BUA6 226 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 PUS7LQ9H0K6 701 aaKnown RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 GPHNQ9NQX3 736 aaPredicted RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 FMN2Q9NZ56 1722 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 CDK11BP21127 795 aaKnown RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 MARCKSP29966 332 aaPredicted RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 BCAMP50895 628 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 SPATA5Q8NB90 893 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 GNPATO15228 680 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 LIG1P18858 919 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 TOB2Q14106 344 aaPredicted RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 PARP10Q53GL7 1025 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 VSIG10Q8N0Z9 540 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 DNAJC25Q9H1X3 360 aa11.83□□□□□ -0.52
MCF2-209ENST00000520602 TTC12Q9H892 705 aaPredicted RBP11.83□□□□□ -0.52
MCF2-209ENST00000520602 SLC3A2P08195 630 aaKnown RBP11.82□□□□□ -0.52
MCF2-209ENST00000520602 RFC4P35249 363 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 TYRO3Q06418 890 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 SSRP1Q08945 709 aaKnown RBP11.82□□□□□ -0.52
MCF2-209ENST00000520602 SCARF1Q14162 830 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 TULP1O00294 542 aaPredicted RBP11.82□□□□□ -0.52
MCF2-209ENST00000520602 CYP19A1P11511 503 aaPredicted RBP11.82□□□□□ -0.52
MCF2-209ENST00000520602 CTDSPL2Q05D32 466 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 DZIP1Q86YF9 867 aaKnown RBP11.82□□□□□ -0.52
MCF2-209ENST00000520602 CEP57L1Q8IYX8 460 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 NFAT5O94916 1531 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 PDE6AP16499 860 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 HSP90AA2PQ14568 343 aaPredicted RBP11.82□□□□□ -0.52
MCF2-209ENST00000520602 WTAPQ15007 396 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 LUZP1Q86V48 1076 aa11.82□□□□□ -0.52
MCF2-209ENST00000520602 UVSSAQ2YD98 709 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 SUSD4Q5VX71 490 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 RNF41Q9H4P4 317 aaPredicted RBP11.81□□□□□ -0.52
MCF2-209ENST00000520602 BRMS1Q9HCU9 246 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 HOOK1Q9UJC3 728 aaKnown RBP11.81□□□□□ -0.52
MCF2-209ENST00000520602 NAA16Q6N069 864 aaPredicted RBP11.81□□□□□ -0.52
MCF2-209ENST00000520602 OLFM4Q6UX06 510 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 FAM200AQ8TCP9 573 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 PHKBQ93100 1093 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 LLPHQ9BRT6 129 aaKnown RBP11.81□□□□□ -0.52
MCF2-209ENST00000520602 FBXO3Q9UK99 471 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 CPDO75976 1380 aa11.81□□□□□ -0.52
MCF2-209ENST00000520602 XRN1Q8IZH2 1706 aaKnown RBP11.81□□□□□ -0.52
MCF2-209ENST00000520602 PFKFB2O60825 505 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 PDIA3P30101 505 aaKnown RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 USP5P45974 858 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 GYG1P46976 350 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 RBM10P98175 930 aaKnown RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 TPD52L1Q16890 204 aaPredicted RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 IQCA1Q86XH1 822 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 AK7Q96M32 723 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 ANGEL1Q9UNK9 670 aaKnown RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 AK9Q5TCS8 1911 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 MROH5Q6ZUA9 1318 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 A0A1B0GVL5 298 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 PES1O00541 588 aaKnown RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 MCAMP43121 646 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 WASF1Q92558 559 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 WWC3Q9ULE0 1092 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 MAGEB6P1A0A0J9YX57 407 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 CCDC196A0A1B0GTZ2 297 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 PRDM1O75626 825 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 ADD1P35611 737 aaKnown RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 ERCC4Q92889 916 aaPredicted RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 KRT23Q9C075 422 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 TFCP2L1Q9NZI6 479 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 RTCBQ9Y3I0 505 aaKnown RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 NKX1-1Q15270 411 aaPredicted RBP11.8□□□□□ -0.52
MCF2-209ENST00000520602 TPTE2Q6XPS3 522 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 SMIM5Q71RC9 77 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 FTOQ9C0B1 505 aaKnown RBP eCLIP11.8□□□□□ -0.52
MCF2-209ENST00000520602 ANO10Q9NW15 660 aa11.8□□□□□ -0.52
MCF2-209ENST00000520602 OVOS2A0A0G2JMS6 1433 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 TOPAZ1Q8N9V7 1692 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 A0A0G2JLW4 131 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 KCNQ2O43526 872 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 ZKSCAN5Q9Y2L8 839 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms