RNA–Protein interactions for RNA: ENST00000504220.6

PCDH11X-208, Transcript of protocadherin 11 X-linked, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH11X, Length 4,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH11X-208	ENST00000504220	PPFIA3	O75145	1194 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	GIGYF1	O75420	1035 aa	Predicted RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SASH3	O75995	380 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SMC2	O95347	1197 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SLC4A2	P04920	1241 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	STIP1	P31948	543 aa	Known RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	ATP6V1A	P38606	617 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	PSMD2	Q13200	908 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	RAB3GAP1	Q15042	981 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CCDC30	Q5VVM6	783 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	FBXO38	Q6PIJ6	1188 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	BRINP3	Q76B58	766 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	LRRN4CL	Q8ND94	238 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	UHMK1	Q8TAS1	419 aa	Known RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	KLHDC4	Q8TBB5	520 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CABLES1	Q8TDN4	633 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	RUNDC1	Q96C34	613 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	UPF3B	Q9BZI7	483 aa	Known RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SENP2	Q9HC62	589 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	AKAP2	Q9Y2D5	859 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	RRP15	Q9Y3B9	282 aa	Known RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SBNO2	Q9Y2G9	1366 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	THSD7A	Q9UPZ6	1657 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	FANCG	O15287	622 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	PECAM1	P16284	738 aa	Predicted RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	PRIM1	P49642	420 aa	Known RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	EVA1C	P58658	441 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	IRX1	P78414	480 aa	Predicted RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	WASHC4	Q2M389	1173 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TEX35	Q5T0J7	233 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	NFXL1	Q6ZNB6	911 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TTLL7	Q6ZT98	887 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	FAM228A	Q86W67	206 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SLC15A3	Q8IY34	581 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TDRD7	Q8NHU6	1098 aa	Known RBP	4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	STAG1	Q8WVM7	1258 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SLC39A13	Q96H72	371 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	VEZT	Q9HBM0	779 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SLC24A3	Q9HC58	644 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	GDPD2	Q9HCC8	539 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	STRN4	Q9NRL3	753 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TSPYL4	Q9UJ04	414 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	ANKRD26	Q9UPS8	1709 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SLIT3	O75094	1523 aa		4.26	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CORO7	P57737	925 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	MCCD1	P59942	119 aa	Predicted RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	GPS2	Q13227	327 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	ZRSR2	Q15696	482 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	FAM117B	Q6P1L5	589 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	EFCAB13	Q8IY85	973 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	OGFOD1	Q8N543	542 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CXorf38	Q8TB03	319 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	KIAA1524	Q8TCG1	905 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	THUMPD2	Q9BTF0	503 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	API5	Q9BZZ5	524 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	IL1RAPL2	Q9NP60	686 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	NOB1	Q9ULX3	412 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SBNO1	A3KN83	1393 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SYCE3	A1L190	88 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220		H0YHG0	523 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	WASL	O00401	505 aa	Predicted RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CDC45	O75419	566 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TPM1	P09493	284 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	E2F5	Q15329	346 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SYNE3	Q6ZMZ3	975 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CCDC91	Q7Z6B0	441 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TRMT2A	Q8IZ69	625 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	RUFY2	Q8WXA3	655 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	MUC3B	Q9H195	1237 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TMEM165	Q9HC07	324 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CCDC61	Q9Y6R9	512 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	ARHGAP33	O14559	1287 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	B4GALT4	O60513	344 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CD2BP2	O95400	341 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	ERCC3	P19447	782 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	BTF3	P20290	206 aa	Known RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	PRKAR2B	P31323	418 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	C16orf87	Q6PH81	154 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SIL1	Q9H173	461 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CCDC39	Q9UFE4	941 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	ZRANB1	Q9UGI0	708 aa		4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	POLR3A	O14802	1390 aa	Predicted RBP	4.25	□□□□□ -1.73
PCDH11X-208	ENST00000504220	SMARCA5	O60264	1052 aa	Predicted RBP	4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	RTN3	O95197	1032 aa	Predicted RBP	4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	LIG1	P18858	919 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	GPT	P24298	496 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	PPP2R1A	P30153	589 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	FNTA	P49354	379 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TRAF1	Q13077	416 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	TRIM29	Q14134	588 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	GPR162	Q16538	588 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	CAMK4	Q16566	473 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	PABPC1L	Q4VXU2	614 aa	Known RBP	4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	HSP90B2P	Q58FF3	399 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	C14orf80	Q86SX3	495 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	FBXO18	Q8NFZ0	1043 aa		4.24	□□□□□ -1.73
PCDH11X-208	ENST00000504220	EGLN2	Q96KS0	407 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms