RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CDK10Q15131 360 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 C11orf91Q3C1V1 193 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 METTL11BQ5VVY1 283 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 FIP1L1Q6UN15 594 aaKnown RBP14.23□□□□□ -0.13
CLN3-252ENST00000636907 ST6GAL2Q96JF0 529 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 MED28Q9H204 178 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 ZNF286AQ9HBT8 521 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 ETAA1Q9NY74 926 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 OR14J1Q9UGF5 321 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 PLCE1Q9P212 2302 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 TUBAL3A6NHL2 446 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 E7EQL1 145 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 HAND1O96004 215 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 CEBPDP49716 269 aaPredicted RBP14.22□□□□□ -0.13
CLN3-252ENST00000636907 TNFAIP6P98066 277 aaPredicted RBP14.22□□□□□ -0.13
CLN3-252ENST00000636907 RBM39Q14498 530 aaKnown RBP14.22□□□□□ -0.13
CLN3-252ENST00000636907 FCN2Q15485 313 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 MOGAT3Q86VF5 341 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 OR10Z1Q8NGY1 313 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 TERB2Q8NHR7 220 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 FN3KRPQ9HA64 309 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 ZNF221Q9UK13 617 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 ZDHHC8Q9ULC8 765 aa14.22□□□□□ -0.13
CLN3-252ENST00000636907 CHD3Q12873 2000 aaKnown RBP14.22□□□□□ -0.13
CLN3-252ENST00000636907 SH2D1BO14796 132 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 SIAH2O43255 324 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 EGR1P18146 543 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 GATA4P43694 442 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 GRK1Q15835 563 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 PAN3Q58A45 887 aaKnown RBP14.21□□□□□ -0.13
CLN3-252ENST00000636907 C17orf107Q6ZR85 190 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 TMED4Q7Z7H5 227 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 LHFPL1Q86WI0 220 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 TMEM17Q86X19 198 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 ZDHHC22Q8N966 263 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 OR52B4Q8NGK2 314 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 MRPL30Q8TCC3 161 aaKnown RBP14.21□□□□□ -0.13
CLN3-252ENST00000636907 CAPSLQ8WWF8 208 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 MED30Q96HR3 178 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 IL19Q9UHD0 177 aa14.21□□□□□ -0.13
CLN3-252ENST00000636907 SRRM5B3KS81 715 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 SSNA1O43805 119 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 PLAUP00749 431 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 SERPINF1P36955 418 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 CD83Q01151 205 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 SMIM21Q3B7S5 101 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 BEX5Q5H9J7 111 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 CD276Q5ZPR3 534 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 MARCH1Q8TCQ1 289 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 ALX4Q9H161 411 aaPredicted RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 GPN1Q9HCN4 374 aaPredicted RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 RANGRFQ9HD47 186 aaPredicted RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 Q9N2K0 584 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 NECAP2Q9NVZ3 263 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 IGSF10Q6WRI0 2623 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 ADGRG4Q8IZF6 3080 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 DIDO1Q9BTC0 2240 aaKnown RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 VSTM5A8MXK1 200 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 ZG16O60844 167 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 KNG1P01042 644 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 GSTT2P0CG29 244 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 TNFSF4P23510 183 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 CFHR2P36980 270 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 NPY4RP50391 375 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 AADACL3Q5VUY0 350 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 ZNF626Q68DY1 528 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 C20orf204Q6ZNR8 217 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 Q6ZS49 121 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 GCSAMQ8N6F7 178 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 OR11H7Q8NGC8 314 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 FYTTD1Q96QD9 318 aaKnown RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 RIMS4Q9H426 269 aaPredicted RBP14.2□□□□□ -0.14
CLN3-252ENST00000636907 RASL12Q9NYN1 266 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 ZNF69Q9UC07 566 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 GLS2Q9UI32 602 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 RNF115Q9Y4L5 304 aa14.2□□□□□ -0.14
CLN3-252ENST00000636907 SMG1Q96Q15 3661 aaKnown RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 TRBV6-6A0A0A6YYG2 114 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 OR5H14A6NHG9 310 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 SNRPGP15A8MWD9 76 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 CREBL2O60519 120 aaPredicted RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 TFF1P04155 84 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 OR5H8P0DN80 308 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 MDH2P40926 338 aaKnown RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 SRSF7Q16629 238 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLN3-252ENST00000636907 SHEQ5VZ18 495 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 ZNF660Q6AZW8 331 aaPredicted RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 C5orf24Q7Z6I8 188 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 BOLLQ8N9W6 283 aaKnown RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 PLPPR1Q8TBJ4 325 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 CCDC107Q8WV48 283 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 ITLN2Q8WWU7 325 aaPredicted RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 ZNF2Q9BSG1 426 aaPredicted RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 TMEM165Q9HC07 324 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 GCM1Q9NP62 436 aa14.19□□□□□ -0.14
CLN3-252ENST00000636907 MYOZ1Q9NP98 299 aaPredicted RBP14.19□□□□□ -0.14
CLN3-252ENST00000636907 RFPL4AA6NLU0 287 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 CEACAM18A8MTB9 384 aa14.18□□□□□ -0.14
CLN3-252ENST00000636907 C17orf100A8MU93 164 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms