RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PAN3Q58A45 887 aaKnown RBP11.94□□□□□ -0.5
UPF1-211ENST00000600868 LRRC10Q5BKY1 277 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 PLAC9Q5JTB6 97 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 ZNF841Q6ZN19 808 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 Q6ZTK2 550 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 FAM216BQ8N7L0 139 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 ASCC1Q8N9N2 400 aaKnown RBP11.94□□□□□ -0.5
UPF1-211ENST00000600868 ZNRF1Q8ND25 227 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 OR8B3Q8NGG8 313 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 OR5D13Q8NGL4 314 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 OR6Q1Q8NGQ2 317 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 CLDND2Q8NHS1 167 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 RAB3CQ96E17 227 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 Q96MF0 132 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 OR8B2Q96RD0 313 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 DPCDQ9BVM2 203 aaPredicted RBP11.94□□□□□ -0.5
UPF1-211ENST00000600868 NARFLQ9H6Q4 476 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 PLEKHJ1Q9NW61 149 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 CTSZQ9UBR2 303 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 PRRC2AP48634 2157 aaKnown RBP11.94□□□□□ -0.5
UPF1-211ENST00000600868 A0A096LNT2 108 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 A0A1B0GW55 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DVL1O14640 695 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 GPR37O15354 613 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 NDUFB3O43676 98 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 TPPPO94811 219 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 TK1P04183 234 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 CSN2P05814 226 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L2P0CJ85 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L3P0CJ86 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L4P0CJ87 422 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L5P0CJ88 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L6P0CJ89 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L7P0CJ90 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 SELLP14151 372 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 USF1P22415 310 aaPredicted RBP11.93□□□□□ -0.5
UPF1-211ENST00000600868 TNFSF8P32971 234 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 OR3A1P47881 315 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 NPY4RP50391 375 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 PAX5Q02548 391 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 RBM39Q14498 530 aaKnown RBP11.93□□□□□ -0.5
UPF1-211ENST00000600868 NKAPLQ5M9Q1 402 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4L9Q6RFH8 374 aaPredicted RBP11.93□□□□□ -0.5
UPF1-211ENST00000600868 LINC00299Q6ZSB3 139 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 C6orf201Q7Z4U5 140 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 OR8H2Q8N162 312 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 TMEM185AQ8NFB2 350 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 OR4S1Q8NGB4 309 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 RAB39BQ96DA2 213 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 ARHGAP5-AS1Q96IT6 56 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 PECRQ9BY49 303 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.93□□□□□ -0.5
UPF1-211ENST00000600868 DUX4Q9UBX2 424 aa11.93□□□□□ -0.5
UPF1-211ENST00000600868 SLC25A10Q9UBX3 287 aaPredicted RBP11.93□□□□□ -0.5
UPF1-211ENST00000600868 MFNGO00587 321 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 MGST3O14880 152 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 FCN3O75636 299 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 HEXAP06865 529 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 GSTP1P09211 210 aaKnown RBP11.92□□□□□ -0.5
UPF1-211ENST00000600868 HIST1H1DP16402 221 aaKnown RBP11.92□□□□□ -0.5
UPF1-211ENST00000600868 TALDO1P37837 337 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 LOXL1Q08397 574 aaPredicted RBP11.92□□□□□ -0.5
UPF1-211ENST00000600868 GRK1Q15835 563 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 C11orf91Q3C1V1 193 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 CDNFQ49AH0 187 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 TMEM69Q5SWH9 247 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 CNIH2Q6PI25 160 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 BRICD5Q6PL45 260 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 BPIFB2Q8N4F0 458 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 OR4M1Q8NGD0 313 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 ST8SIA4Q92187 359 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 DIRAS2Q96HU8 199 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 SULT4A1Q9BR01 284 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 REG4Q9BYZ8 158 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 CHST6Q9GZX3 395 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 PPA2Q9H2U2 334 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 EXTL2Q9UBQ6 330 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 CLN8Q9UBY8 286 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 KCNK7Q9Y2U2 307 aa11.92□□□□□ -0.5
UPF1-211ENST00000600868 TRAV18A0A075B6X5 111 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 SERPINE3A8MV23 424 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 HSPB6O14558 160 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 CA11O75493 328 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 MELTFP08582 738 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 GNB3P16520 340 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 ERP29P30040 261 aaKnown RBP11.91□□□□□ -0.5
UPF1-211ENST00000600868 MNDAP41218 407 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 ZNF260Q3ZCT1 412 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 WDR25Q64LD2 544 aaPredicted RBP11.91□□□□□ -0.5
UPF1-211ENST00000600868 BAIAP2L2Q6UXY1 529 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 RTN4RL2Q86UN3 420 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 WFDC11Q8NEX6 87 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 NEK7Q8TDX7 302 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 FAAP24Q9BTP7 215 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 NCOR1P1Q9H4R4 102 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 RABL2AQ9UBK7 228 aaPredicted RBP11.91□□□□□ -0.5
UPF1-211ENST00000600868 RABL2BQ9UNT1 228 aa11.91□□□□□ -0.5
UPF1-211ENST00000600868 UBE2QL1A1L167 161 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 FUOMA2VDF0 154 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 A8MXK9 166 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms