RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 DEFB108BQ8NET1 73 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 OR5T2Q8NGG2 359 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 ANGPTL6Q8NI99 470 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 SNX22Q96L94 193 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 C7orf50Q9BRJ6 194 aaKnown RBP12.79□□□□□ -0.36
TRIM28-209ENST00000597423 ZNF665Q9H7R5 613 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 C12orf4Q9NQ89 552 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 KLK11Q9UBX7 282 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 IGHV3OR15-7A0A075B7D8 119 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 MEIOCA2RUB1 952 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 PTHLHP12272 177 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 TBPP20226 339 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 CDKN1AP38936 164 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 TAS2R19P59542 299 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 GUCA2AQ02747 115 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 COL10A1Q03692 680 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 DYRK1AQ13627 763 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 SRSF7Q16629 238 aaKnown RBP eCLIP12.78□□□□□ -0.36
TRIM28-209ENST00000597423 RGS21Q2M5E4 152 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 SLC36A1Q7Z2H8 476 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 ZNF295-AS1Q8N0V1 137 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 MUC20Q8N307 709 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-209ENST00000597423 TMEM229BQ8NBD8 167 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 NUDCD2Q8WVJ2 157 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 SDSLQ96GA7 329 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 ST6GALNAC5Q9BVH7 336 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 FAM234AQ9H0X4 552 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 CHODLQ9H9P2 273 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 BARX1Q9HBU1 254 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-209ENST00000597423 MGAT4AQ9UM21 535 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 CACNG2Q9Y698 323 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 ABCA4P78363 2273 aa12.78□□□□□ -0.36
TRIM28-209ENST00000597423 IGKV1D-17A0A075B6S4 117 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 NAP1L6A6NFF2 107 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF736B4DX44 427 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-209ENST00000597423 HSPB6O14558 160 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 BTG1P62324 171 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 ASAH1Q13510 395 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 ACTBL2Q562R1 376 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 OLFML2AQ68BL7 652 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 STUMQ69YW2 141 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 SLC35E4Q6ICL7 350 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 HOGA1Q86XE5 327 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 BPIFB2Q8N4F0 458 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 CD177Q8N6Q3 437 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 ASCC1Q8N9N2 400 aaKnown RBP12.77□□□□□ -0.37
TRIM28-209ENST00000597423 POC5Q8NA72 575 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 GCDHQ92947 438 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-209ENST00000597423 TRIM63Q969Q1 353 aa12.77□□□□□ -0.37
TRIM28-209ENST00000597423 SPTAN1Q13813 2472 aaKnown RBP12.76□□□□□ -0.37
TRIM28-209ENST00000597423 LINC00854A0A1B0GVQ3 168 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 ANKRD20A5PA0PJZ0 165 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM30CPA0ZSE6 113 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 MGST3O14880 152 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 PPIHO43447 177 aaKnown RBP12.76□□□□□ -0.37
TRIM28-209ENST00000597423 LANCL1O43813 399 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 SSX5O60225 188 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 GYPAP02724 150 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 AKAIN1P0CW23 69 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 TAS2R46P59540 309 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 IL13RA1P78552 427 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 IFITM3Q01628 133 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 GRK1Q15835 563 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 FAM201AQ5SY85 155 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 MARVELD3Q96A59 401 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM165Q9HC07 324 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF701Q9NV72 531 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF581Q9P0T4 197 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF222Q9UK12 451 aa12.76□□□□□ -0.37
TRIM28-209ENST00000597423 ELF5Q9UKW6 265 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-209ENST00000597423 TRBV6-6A0A0A6YYG2 114 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 MEIS3P1A6NDR6 274 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 K7N7A8 449 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 RP2O75695 350 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF205O95201 554 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 IFNA6P05013 189 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 CSN2P05814 226 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 NAT1P18440 290 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 AMY2BP19961 511 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 COL8A1P27658 744 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 OR3A3P47888 321 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 CEBPDP49716 269 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-209ENST00000597423 KLF9Q13886 244 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-209ENST00000597423 MEF2DQ14814 521 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 CHRFAM7AQ494W8 412 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF788Q6ZQV5 615 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 DCDC5Q6ZRR9 648 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 GDPD3Q7L5L3 318 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 MOB1BQ7L9L4 216 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 TGIF2LYQ8IUE0 185 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 OR4K15Q8NH41 348 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 IGFBPL1Q8WX77 278 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 CCL13Q99616 98 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 PPA2Q9H2U2 334 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 NCOR1P1Q9H4R4 102 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF286AQ9HBT8 521 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 KCNIP1Q9NZI2 227 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 TRAPPC2LQ9UL33 140 aa12.75□□□□□ -0.37
TRIM28-209ENST00000597423 KIR2DS1A0A191URI9 304 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM82A0PJX8 343 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms