RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 EXTL1Q92935 676 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 ARL11Q969Q4 196 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 SLAMF9Q96A28 289 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 C18orf12Q96KH6 178 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 PRRX2Q99811 253 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 SYT3Q9BQG1 590 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 RSRP1Q9BUV0 290 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 LPAR3Q9UBY5 353 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 AHCTF1Q8WYP5 2266 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 A0A1B0GWJ7 208 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 ZNF732B4DXR9 585 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 H7C1Q1 480 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 CLN5O75503 358 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 SLC10A1Q14973 349 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 SRSF7Q16629 238 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS53-220ENST00000576149 BEND4Q6ZU67 534 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 LYZL2Q7Z4W2 148 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 MCEMP1Q8IX19 187 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 ZFP62Q8NB50 900 aaPredicted RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 MSI2Q96DH6 328 aaKnown RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 LRRC46Q96FV0 321 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 NARS2Q96I59 477 aaKnown RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 HS3ST6Q96QI5 342 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 TAF9BQ9HBM6 251 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 ZC4H2Q9NQZ6 224 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 ZNF629Q9UEG4 869 aaPredicted RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 GPR179Q6PRD1 2367 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 TMEM218A2RU14 115 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 ZNF705EA8MWA4 302 aaPredicted RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 LRP3O75074 770 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 PPYP01298 95 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 MBPP02686 304 aaPredicted RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 PF4V1P10720 104 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 TAGLN2P37802 199 aaKnown RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 HERV-K104P61576 105 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 DEFA5Q01523 94 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 PLP2Q04941 152 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 MST1LQ2TV78 715 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 EIF5AL1Q6IS14 154 aaKnown RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 OR5A2Q8NGI9 324 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 OR5L1Q8NGL2 311 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 OR11L1Q8NGX0 322 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 SAT2Q96F10 170 aaPredicted RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 OPA3Q9H6K4 179 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 MMP26Q9NRE1 261 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 MTCH1Q9NZJ7 389 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 RCC2Q9P258 522 aaKnown RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 PRSS50Q9UI38 385 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 AMDHD2Q9Y303 409 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 LSM5Q9Y4Y9 91 aaKnown RBP8.65□□□□□ -1.02
VPS53-220ENST00000576149 LIPGQ9Y5X9 500 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 R4GN57 208 aa8.65□□□□□ -1.02
VPS53-220ENST00000576149 FREM1Q5H8C1 2179 aa8.65□□□□□ -1.03
VPS53-220ENST00000576149 CD300LBA8K4G0 201 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 NAPSAO96009 420 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 GAPDHP04406 335 aaKnown RBP8.64□□□□□ -1.03
VPS53-220ENST00000576149 S100A9P06702 114 aaKnown RBP8.64□□□□□ -1.03
VPS53-220ENST00000576149 CD46P15529 392 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 TMEM33P57088 247 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 TMEM268Q5VZI3 342 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.64□□□□□ -1.03
VPS53-220ENST00000576149 MKXQ8IYA7 352 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 LGI3Q8N145 548 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 IL22RA1Q8N6P7 574 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 CCDC71LQ8N9Z2 235 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 SMIM8Q96KF7 97 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 ZNF552Q9H707 407 aaPredicted RBP8.64□□□□□ -1.03
VPS53-220ENST00000576149 PLEKHA2Q9HB19 425 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 Q9N2K0 584 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 FAM86C1Q9NVL1 165 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 E5RGE8 158 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 ABCD4O14678 606 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 ATG12O94817 140 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 IL18BPO95998 194 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 RCC1P18754 421 aaPredicted RBP8.64□□□□□ -1.03
VPS53-220ENST00000576149 MPV17LQ2QL34 196 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 OR5T2Q8NGG2 359 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 OR4A4PQ8NGN8 299 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 WDYHV1Q96HA8 205 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 HIST1H2AAQ96QV6 131 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 FBXL17Q9UF56 701 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 NSG2Q9Y328 171 aa8.64□□□□□ -1.03
VPS53-220ENST00000576149 TRAPPC2LH3BP13 241 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 DNASE2O00115 360 aaPredicted RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 NUPL2O15504 423 aaKnown RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 PHF1O43189 567 aaPredicted RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 JTBO76095 146 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 OPN1MWP04001 364 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 ZNF806P0C7X5 589 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 OPN1MW2P0DN77 364 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 OPN1MW3P0DN78 364 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 GLI4P10075 376 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 DUSP1P28562 367 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 APLNRP35414 380 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 WNT5AP41221 380 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 AKR1C2P52895 323 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 AKR1C1Q04828 323 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 PJVKQ0ZLH3 352 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 COTL1Q14019 142 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 HIKESHIQ53FT3 197 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms