RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CALHM1Q8IU99 346 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 LGI3Q8N145 548 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 GAPTQ8N292 157 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 C9orf62Q8N4C0 152 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 GVQW1Q8N7I0 195 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 ST6GALNAC3Q8NDV1 305 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 AKR1E2Q96JD6 320 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 DMRTB1Q96MA1 342 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 DOCK7Q96N67 2140 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 SEC22CQ9BRL7 303 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 ZNF2Q9BSG1 426 aaPredicted RBP6.42□□□□□ -1.38
VPS39-204ENST00000561818 CABLES2Q9BTV7 478 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 DPCDQ9BVM2 203 aaPredicted RBP6.42□□□□□ -1.38
VPS39-204ENST00000561818 HES4Q9HCC6 221 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 Q9N2K0 584 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 FAM212BQ9NTI7 297 aaPredicted RBP6.42□□□□□ -1.38
VPS39-204ENST00000561818 COQ3Q9NZJ6 369 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 TAAR3PQ9P1P4 343 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 DNAJB11Q9UBS4 358 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 VSIG4Q9Y279 399 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 TMED3Q9Y3Q3 217 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 MED12LQ86YW9 2145 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 CUL9Q8IWT3 2517 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 IGLV3-9A0A075B6K5 115 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 IGHV1-18A0A0C4DH31 117 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 A0A1W2PP11 408 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 TMEM30CPA0ZSE6 113 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ZNF503-AS2A6NEH8 195 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 OR5H14A6NHG9 310 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 CRYM-AS1A6NIL9 109 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 LRRC30A6NM36 301 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 DBX1A6NMT0 343 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 OR2AT4A6NND4 320 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 EEF1E1-BLOC1S5C9J1V9 151 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 TAAR5O14804 337 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 VSIG10L2P0DP72 767 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 CCL2P13500 99 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 IRF2P14316 349 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 AKR1C4P17516 323 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 TNFRSF1AP19438 455 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 BCL3P20749 454 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 S100A11P31949 105 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ASCL1P50553 236 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ZNF81P51508 661 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 FOXG1P55316 489 aaPredicted RBP6.41□□□□□ -1.38
VPS39-204ENST00000561818 PRSS12P56730 875 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 HLA-DRB3P79483 266 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ZNF154Q13106 437 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 PPP1R1AQ13522 171 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 FBXL19-AS1Q494R0 122 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 PAN3Q58A45 887 aaKnown RBP6.41□□□□□ -1.38
VPS39-204ENST00000561818 SIGIRRQ6IA17 410 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 SLC35E4Q6ICL7 350 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 C11orf87Q6NUJ2 197 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ZNF880Q6PDB4 577 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 SLC22A25Q6T423 547 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 SEM1Q6ZVN7 128 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 NLRC3Q7RTR2 1065 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 SLC51BQ86UW2 128 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 DOLPP1Q86YN1 238 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 C1orf87Q8N0U7 546 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 BHLHE23Q8NDY6 225 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 OR5D13Q8NGL4 314 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 OR11L1Q8NGX0 322 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 OR10J5Q8NHC4 309 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 MARCH1Q8TCQ1 289 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 NINJ1Q92982 152 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 S100PBPQ96BU1 408 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 NKX3-1Q99801 234 aaPredicted RBP6.41□□□□□ -1.38
VPS39-204ENST00000561818 SULT4A1Q9BR01 284 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 FAAP24Q9BTP7 215 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 BEX2Q9BXY8 128 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 EGLN1Q9GZT9 426 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 DNTTIP1Q9H147 329 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 OPN3Q9H1Y3 402 aaPredicted RBP6.41□□□□□ -1.38
VPS39-204ENST00000561818 C5orf66Q9H5L9 145 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ESRP2Q9H6T0 727 aaKnown RBP6.41□□□□□ -1.38
VPS39-204ENST00000561818 MTCH1Q9NZJ7 389 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 JKAMPQ9P055 326 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 LPAR3Q9UBY5 353 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 NDRG3Q9UGV2 375 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 IL19Q9UHD0 177 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 UBQLN2Q9UHD9 624 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 LAMP3Q9UQV4 416 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 ACACAQ13085 2346 aa6.41□□□□□ -1.38
VPS39-204ENST00000561818 KANTRA0A1W2PQU2 76 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 C5orf51A6NDU8 294 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 WIPF3A6NGB9 483 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 OOEPA6NGQ2 149 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 A6NLC8 198 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 A8MV72 311 aaPredicted RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 M0R1B8 84 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 GPR31O00270 319 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 GOSR1O95249 250 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 CDS2O95674 445 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 PPYP01298 95 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 SLC25A6P12236 298 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 CXCL3P19876 107 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 PSMB6P28072 239 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 CHRNB4P30926 498 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms