RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 VLDLRP98155 873 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SRYQ05066 204 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 RAB40BQ12829 278 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF154Q13106 437 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SNTB2Q13425 540 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GANABQ14697 944 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TRAM1Q15629 374 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ZNHIT3Q15649 155 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 NDUFA9Q16795 377 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF311Q5JNZ3 666 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PYY3Q5JQD4 70 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C9orf64Q5T6V5 341 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HIST2H3PS2Q5TEC6 136 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 LIPKQ5VXJ0 399 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HBMQ6B0K9 141 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C22orf42Q6IC83 251 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 EIF5AL1Q6IS14 154 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 H3F3CQ6NXT2 135 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MED27Q6P2C8 311 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 FAM199XQ6PEV8 388 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DRAM2Q6UX65 266 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MBOAT1Q6ZNC8 495 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HIST2H3AQ71DI3 136 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 AMZ2Q86W34 360 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TGIF2LXQ8IUE1 241 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SYT14Q8NB59 555 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HSD17B11Q8NBQ5 300 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SDR9C7Q8NEX9 313 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR10G2Q8NGC3 310 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR4K2Q8NGD2 314 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR5B17Q8NGF7 314 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR5T3Q8NGG3 340 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR8J1Q8NGP2 316 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR1J4Q8NGS1 313 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR2G2Q8NGZ5 317 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR52P1PQ8NH57 321 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 STOML3Q8TAV4 291 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 STAG3L4Q8TBR4 150 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SLC7A13Q8TCU3 470 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 RNF139Q8WU17 664 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C15orf40Q8WUR7 153 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MAFIPQ8WZ33 124 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR1E3Q8WZA6 343 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MRPS31Q92665 395 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ARL11Q969Q4 196 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM203Q969S6 136 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 NT5C3BQ969T7 300 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ECHDC3Q96DC8 303 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OTUB2Q96DC9 234 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MED8Q96G25 268 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SMARCD1Q96GM5 515 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C12orf42Q96LP6 360 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C12orf66Q96MD2 445 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 WFIKKN1Q96NZ8 548 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR5B2Q96R09 309 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SPIN2AQ99865 258 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SPIN2BQ9BPZ2 258 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TBL1YQ9BQ87 522 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF2Q9BSG1 426 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DOHHQ9BU89 302 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 RIOK2Q9BVS4 552 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 FAIM2Q9BWQ8 316 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TM6SF2Q9BZW4 377 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DPY30Q9C005 99 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DERL2Q9GZP9 239 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ARL6Q9H0F7 186 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C20orf85Q9H1P6 137 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MFSD1Q9H3U5 465 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 LRRN3Q9H3W5 708 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SPACA1Q9HBV2 294 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 UQCC1Q9NVA1 299 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 COX16Q9P0S2 106 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ABRACLQ9P1F3 81 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DHCR7Q9UBM7 475 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OPN4Q9UHM6 478 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PCTPQ9UKL6 214 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SLC35A3Q9Y2D2 325 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PPIL1Q9Y3C6 166 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GOLT1BQ9Y3E0 138 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MMACHCQ9Y4U1 282 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 UBIAD1Q9Y5Z9 338 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ZFC3H1O60293 1989 aaKnown RBP2.12□□□□□ -2.07
VPS13C-208ENST00000559119 COL5A1P20908 1838 aaPredicted RBP2.12□□□□□ -2.07
VPS13C-208ENST00000559119 FOCADQ5VW36 1801 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 QSER1Q2KHR3 1735 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 IGLV2-18A0A075B6J9 118 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 A0A0U1RQV5 110 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM269A0A1B0GVZ9 245 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 GNG14A0A1W2PPG7 69 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 KANTRA0A1W2PQU2 76 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 METTL21EPA6NDL7 271 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 F5H5P2 479 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 H0YIV9 168 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 H3BMH7 237 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 K7EP13 123 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 K7N7A8 449 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 MFNGO00587 321 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 RFXANKO14593 260 aa2.12□□□□□ -2.07
VPS13C-208ENST00000559119 EEF1E1O43324 174 aaKnown RBP2.12□□□□□ -2.07
VPS13C-208ENST00000559119 MFSD11O43934 449 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms