RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 NR1H4Q96RI1 486 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-219ENST00000555563 ZNRD1Q9P1U0 126 aa11.19□□□□□ -0.62
SHMT2-219ENST00000555563 SF3B6Q9Y3B4 125 aaKnown RBP11.19□□□□□ -0.62
SHMT2-219ENST00000555563 POMT1Q9Y6A1 747 aa11.19□□□□□ -0.62
SHMT2-219ENST00000555563 LINC00312Q9Y6C7 94 aa11.19□□□□□ -0.62
SHMT2-219ENST00000555563 A0A0G2JK05 382 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 HSPB6O14558 160 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 DEGS1O15121 323 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 PIN1P1O15428 100 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 RGS10O43665 173 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 PAHP00439 452 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 RBP4P02753 201 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 ERP29P30040 261 aaKnown RBP11.18□□□□□ -0.62
SHMT2-219ENST00000555563 TGFBR2P37173 567 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 VHLP40337 213 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 IER3P46695 156 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 INSL4Q14641 139 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 ATXN7L3Q14CW9 347 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-219ENST00000555563 MIDNQ504T8 468 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 AWAT1Q58HT5 328 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 Q8NFD4 153 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 OR51T1Q8NGJ9 327 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 TMED9Q9BVK6 235 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 HEXA-AS1Q9H8Q6 139 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 IL36GQ9NZH8 169 aa11.18□□□□□ -0.62
SHMT2-219ENST00000555563 FAM181BA6NEQ2 426 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 CLPXO76031 633 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 HTR3BO95264 441 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 MAS1P04201 325 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 CSN2P05814 226 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 IGHV1-8P0DP01 117 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 SERPINA2P20848 420 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 MAPK3P27361 379 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-219ENST00000555563 GLIPR1P48060 266 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 AESQ08117 197 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 IL13RA2Q14627 380 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 TAF9Q16594 264 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 PAN3Q58A45 887 aaKnown RBP11.17□□□□□ -0.62
SHMT2-219ENST00000555563 FAM27D1Q5T7N8 215 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 TRAPPC6BQ86SZ2 158 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 JAGN1Q8N5M9 183 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 THRSPQ92748 146 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 MUL1Q969V5 352 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 COQ2Q96H96 371 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 AJUBAQ96IF1 538 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 CCDC90BQ9GZT6 254 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 METTL9Q9H1A3 318 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 ING3Q9NXR8 418 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 ZNF581Q9P0T4 197 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 RAB26Q9ULW5 256 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 ING4Q9UNL4 249 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 FOXJ3Q9UPW0 622 aa11.17□□□□□ -0.62
SHMT2-219ENST00000555563 TRAV24A0A0B4J272 114 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 A0A1W2PP11 408 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 ODAMA1E959 279 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 HSMCR30P0CW71 290 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 RBM11P57052 281 aaKnown RBP11.16□□□□□ -0.62
SHMT2-219ENST00000555563 FOXL1Q12952 345 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 SLC22A6Q4U2R8 563 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 ACSM3Q53FZ2 586 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 KRBOX4Q5JUW0 171 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 RBM48Q5RL73 367 aaKnown RBP11.16□□□□□ -0.62
SHMT2-219ENST00000555563 PRSS48Q7RTY5 328 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 NKAIN3Q8N8D7 197 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 UFD1Q92890 307 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 PPIL3Q9H2H8 161 aaKnown RBP11.16□□□□□ -0.62
SHMT2-219ENST00000555563 DPAGT1Q9H3H5 408 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 ST3GAL6Q9Y274 331 aa11.16□□□□□ -0.62
SHMT2-219ENST00000555563 MRPS28Q9Y2Q9 187 aaKnown RBP11.16□□□□□ -0.62
SHMT2-219ENST00000555563 UBE2J1Q9Y385 318 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-219ENST00000555563 TRGV10A0A0A0MS01 117 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 FUOMA2VDF0 154 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 BTBD17A6NE02 478 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 ODF3BA8MYP8 253 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 GPR137BO60478 399 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 MMP23AO75900 390 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 CSTBP04080 98 aaKnown RBP11.15□□□□□ -0.62
SHMT2-219ENST00000555563 OMGP23515 440 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 PAX6P26367 422 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 CFPP27918 469 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 MAP2K4P45985 399 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 NHLRC3Q5JS37 347 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 PRAMEF5Q5TYX0 476 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 LIPKQ5VXJ0 399 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 LYPD6Q86Y78 171 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 OSR2Q8N2R0 312 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 MS4A15Q8N5U1 240 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 BEND2Q8NDZ0 799 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 OR13D1Q8NGV5 346 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 DYRK2Q92630 601 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 S100A13Q99584 98 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 VPREB3Q9UKI3 123 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 BLOC1S6Q9UL45 172 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 SESN1Q9Y6P5 492 aa11.15□□□□□ -0.62
SHMT2-219ENST00000555563 ANK2Q01484 3957 aa11.15□□□□□ -0.63
SHMT2-219ENST00000555563 ZNF780AO75290 641 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-219ENST00000555563 SC5DO75845 299 aa11.14□□□□□ -0.63
SHMT2-219ENST00000555563 OR7C1O76099 320 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-219ENST00000555563 ARG1P05089 322 aa11.14□□□□□ -0.63
SHMT2-219ENST00000555563 GP2P55259 537 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms