RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 LIPHQ8WWY8 451 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 RDH5Q92781 318 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 FGF11Q92914 225 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 SLC2A9Q9NRM0 540 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 C9JQL5 133 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 CYR61O00622 381 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 CYB561P49447 251 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 CD81P60033 236 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 FZD5Q13467 585 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 MSMO1Q15800 293 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 DMRTA1Q5VZB9 504 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 OR2AE1Q8NHA4 323 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 KIAA1456Q9P272 454 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 CACNA1EQ15878 2313 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 RIF1Q5UIP0 2472 aaKnown RBP12.53□□□□□ -0.4
LIMS1-215ENST00000544547 IGHV3-64DA0A0J9YX35 117 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 ATXN7O15265 892 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-215ENST00000544547 SIAH2O43255 324 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 PGA3P0DJD8 388 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 CT45A8P0DMV1 189 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 CT45A9P0DMV2 189 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 PTGER4P35408 488 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 CT45A2Q5DJT8 189 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 BTNL8Q6UX41 500 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 OR8B12Q8NGG6 310 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 VN1R17PQ8TDU5 208 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 GPHA2Q96T91 129 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 ATP5SQ99766 215 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF665Q9H7R5 613 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 TMEM74BQ9NUR3 256 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 TIMM10BQ9Y5J6 103 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 SPTBN1Q01082 2364 aaKnown RBP12.52□□□□□ -0.4
LIMS1-215ENST00000544547 ERGP11308 486 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 GFERP55789 205 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 TFF2Q03403 129 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 LIAT1Q6ZQX7 453 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 POC1BQ8TC44 478 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 FER1L6-AS2Q96M78 137 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 MOB1AQ9H8S9 216 aa12.52□□□□□ -0.4
LIMS1-215ENST00000544547 C3orf85A0A1B0GTC6 90 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HSBP1L1C9JCN9 74 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BKO60814 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BJP06899 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BOP23527 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BBP33778 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BDP58876 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 TPPP2P59282 170 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 PPP1CBP62140 327 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BCP62807 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 PNRC1Q12796 327 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST2H2BEQ16778 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 LBHQ53QV2 105 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-215ENST00000544547 PLAC9Q5JTB6 97 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-215ENST00000544547 MAML2Q8IZL2 1156 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-215ENST00000544547 POC1AQ8NBT0 407 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BHQ93079 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BNQ99877 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 HIST1H2BMQ99879 126 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 PHF7Q9BWX1 381 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-215ENST00000544547 DCAF16Q9NXF7 216 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 C17orf51A8MQB3 221 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 THEM4Q5T1C6 240 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 OR1P1Q8NH06 330 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 TAAR9Q96RI9 348 aa12.52□□□□□ -0.41
LIMS1-215ENST00000544547 BARX1Q9HBU1 254 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-215ENST00000544547 TTRP02766 147 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 SLC25A26Q70HW3 274 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 CRIPAKQ8N1N5 446 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 EXTL1Q92935 676 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 PCGF1Q9BSM1 259 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 RNF24Q9Y225 148 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 ZNF814B7Z6K7 855 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 F8VVB4 439 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 F8VWA3 439 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 PLPP3O14495 311 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 IL2RAP01589 272 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 IGHV2-70P01814 119 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 TMEM183BQ1AE95 376 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 LOC101059948A0A1B0GTJ6 334 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 LINC01565O15544 149 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 ZNF735P0CB33 412 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 COL9A1P20849 921 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 CATR1Q13166 79 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 C11orf42Q8N5U0 333 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 SLC25A43Q8WUT9 341 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-215ENST00000544547 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-215ENST00000544547 C8orf44Q96CB5 159 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 CHST5Q9GZS9 411 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 A0A1B0GTQ1 180 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 TIMM8AO60220 97 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-215ENST00000544547 SPINK2P20155 84 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 VAX1Q5SQQ9 334 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 PHYHD1Q5SRE7 291 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 DEGS2Q6QHC5 323 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 OR52M1Q8NGK5 317 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 MYOTQ9UBF9 498 aa12.51□□□□□ -0.41
LIMS1-215ENST00000544547 IGHV3-15A0A0B4J1V0 119 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 NXPH2O95156 264 aa12.5□□□□□ -0.41
LIMS1-215ENST00000544547 FCGR3AP08637 254 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms