RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FGGYQ96C11 551 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 Q96MT0 163 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 OPALINQ96PE5 141 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 RBM14Q96PK6 669 aaKnown RBP9.06□□□□□ -0.96
VPS28-214ENST00000531032 SLC25A33Q9BSK2 321 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 RHOFQ9HBH0 211 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 FRRS1LQ9P0K9 344 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 HHLA2Q9UM44 414 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 GSTK1Q9Y2Q3 226 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 TSSC4Q9Y5U2 329 aaPredicted RBP9.06□□□□□ -0.96
VPS28-214ENST00000531032 KIAA2026Q5HYC2 2103 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 A0A087X0M5 115 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 A0A1B0GX30 115 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 TCRBV4S1A1TA0A5B7 111 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 ODAMA1E959 279 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 LEUTXA8MZ59 168 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 J3QLW9 94 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 J3QRE1 110 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 SLC16A6O15403 523 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 AMY1AP04745 511 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 AMY2AP04746 511 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 LPLP06858 475 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 ZNF19P17023 458 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 GDNFP39905 211 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 GLIPR1P48060 266 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 CCR9P51686 369 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 NANOS3P60323 173 aaKnown RBP9.05□□□□□ -0.96
VPS28-214ENST00000531032 SLC35A2P78381 396 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 AESQ08117 197 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 HLA-DRB5Q30154 266 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 ABCA11PQ4W5N1 156 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 KCTD20Q7Z5Y7 419 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 CENPVQ7Z7K6 275 aaPredicted RBP9.05□□□□□ -0.96
VPS28-214ENST00000531032 ACBD7Q8N6N7 88 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 CHST4Q8NCG5 386 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 ZNF555Q8NEP9 628 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 CAPSLQ8WWF8 208 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 MYDGFQ969H8 173 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 RFT1Q96AA3 541 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 CREB3L1Q96BA8 519 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 COQ2Q96H96 371 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 ZNF286AQ9HBT8 521 aa9.05□□□□□ -0.96
VPS28-214ENST00000531032 FAM172BPA6NC97 362 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 OOSP1A8MZH6 123 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 ANKRD65E5RJM6 399 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 LY6LH3BQJ8 138 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 BUB1B-PAK6H3BSN5 160 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 M0QZK8 103 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 FADS2O95864 444 aaKnown RBP9.04□□□□□ -0.96
VPS28-214ENST00000531032 PF4P02776 101 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 DBTP11182 482 aaKnown RBP9.04□□□□□ -0.96
VPS28-214ENST00000531032 CEACAM3P40198 252 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 PTGFRP43088 359 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 SLC25A30Q5SVS4 291 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 TPTE2P1Q5T6R2 138 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 Q6P435 159 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 RNF144BQ7Z419 303 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 SAXO1Q8IYX7 474 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 OR4X2Q8NGF9 303 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 OR51A4Q8NGJ6 313 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 OR5D18Q8NGL1 313 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 OR10AC1Q8NH08 325 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 LGALS12Q96DT0 336 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 RCC1LQ96I51 464 aaKnown RBP9.04□□□□□ -0.96
VPS28-214ENST00000531032 C4orf36Q96KX1 117 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 SPACA5Q96QH8 159 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 ALG8Q9BVK2 526 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 NEK6Q9HC98 313 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 AASSQ9UDR5 926 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 PCDHGB5Q9Y5G0 923 aa9.04□□□□□ -0.96
VPS28-214ENST00000531032 COL7A1Q02388 2944 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 LOC100130705A0A1B0GUX0 176 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 OR4C45A6NMZ5 311 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 ZNF729A6NN14 1252 aaPredicted RBP9.03□□□□□ -0.96
VPS28-214ENST00000531032 K7EIL1 84 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 SLC33A1O00400 549 aaPredicted RBP9.03□□□□□ -0.96
VPS28-214ENST00000531032 DUS4LO95620 317 aaKnown RBP9.03□□□□□ -0.96
VPS28-214ENST00000531032 MPIG6BO95866 241 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 ZNF44P15621 663 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 PRRX1P54821 245 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 CDK5R1Q15078 307 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 C17orf58Q2M2W7 97 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 KRBOX4Q5JUW0 171 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 UTF1Q5T230 341 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 CCDC144NLQ6NUI1 221 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 C10orf99Q6UWK7 81 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 OSR2Q8N2R0 312 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 OR4D6Q8NGJ1 314 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 OR13C3Q8NGS6 347 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 OR13C9Q8NGT0 318 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 PELI1Q96FA3 418 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 RDH12Q96NR8 316 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 SLC29A1Q99808 456 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 INPP5EQ9NRR6 644 aa9.03□□□□□ -0.96
VPS28-214ENST00000531032 SMPD3Q9NY59 655 aaPredicted RBP9.03□□□□□ -0.96
VPS28-214ENST00000531032 RPL36Q9Y3U8 105 aaKnown RBP9.03□□□□□ -0.96
VPS28-214ENST00000531032 KBTBD11-OT1A0A1B0GTJ5 212 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A18PA6NE21 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A16PA6NEW6 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A20PA6NIJ5 464 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms