RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 MBPP02686 304 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 SLC25A5P05141 298 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 GRPP07492 148 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 SMIM13P0DJ93 91 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 CXCL3P19876 107 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 EIF1P41567 113 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 ACVR1Q04771 509 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 SLC38A11Q08AI6 406 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 RIGQ13278 110 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 PNLIPRP3Q17RR3 467 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 MRGPRGQ86SM5 289 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 OR52N4Q8NGI2 321 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 RDH5Q92781 318 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 GMPPAQ96IJ6 420 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 HIST1H4GQ99525 98 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 COMMD5Q9GZQ3 224 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 GPR84Q9NQS5 396 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 NRXN2Q9P2S2 1712 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 TINAGQ9UJW2 476 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 SLC5A6Q9Y289 635 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 FAM186AA6NE01 2351 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 C9orf170A2RU37 121 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 NPIPB9F8W1W9 429 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 IL4P05112 153 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 ATF1P18846 271 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 FGF8P55075 233 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 RHOBP62745 196 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 CD226Q15762 336 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 ANKRD55Q3KP44 614 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 FBXL14Q8N1E6 418 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 TIMP4Q99727 224 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 JAM3Q9BX67 310 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 MFRPQ9BY79 579 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 MRPL37Q9BZE1 423 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 SLC25A19Q9HC21 320 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 C11orf94C9JXX5 98 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 MT-ATP6P00846 226 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 FKBP2P26885 142 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 AGERQ15109 404 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 ARIH2OSQ8N7S6 290 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 FGF11Q92914 225 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 ZC3HAV1LQ96H79 300 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 AAMDCQ9H7C9 122 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 PLSCR4Q9NRQ2 329 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 ZDHHC8Q9ULC8 765 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 DAPP1Q9UN19 280 aa7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 C19orf53Q9UNZ5 99 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-218ENST00000513024 HAX1O00165 279 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 CYR61O00622 381 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 ONECUT2O95948 504 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 MDKP21741 143 aaPredicted RBP7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 RPL18Q07020 188 aaKnown RBP7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 HYAL1Q12794 435 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 HFEQ30201 348 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 ACER2Q5QJU3 275 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 DGAT2L7PQ6IED9 249 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 BCORP1Q8N888 145 aa7.77□□□□□ -1.16
LIMCH1-218ENST00000513024 APC2O95996 2303 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 C19orf67A6NJJ6 358 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 HSPB2A8KAH6 182 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 METTL12A8MUP2 240 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 DSCR3O14972 297 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 PGFP49763 221 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 HSPB2Q16082 182 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 OR2T6Q8NHC8 308 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 GHITMQ9H3K2 345 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 MARCH5Q9NX47 278 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 B3GAT1Q9P2W7 334 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 ZMIZ1Q9ULJ6 1067 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 SPCS1Q9Y6A9 102 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 MTCH2Q9Y6C9 303 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 DOCK5Q9H7D0 1870 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 IGHV3-20A0A0C4DH32 117 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 A0A1B0GW15 77 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 HOXD4P09016 255 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 ZBTB25P24278 435 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 GPR3P46089 330 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 MVDP53602 400 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 PYCR3Q53H96 274 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 LDLRAD3Q86YD5 345 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 OR5AS1Q8N127 324 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 C5orf17Q8NAS9 161 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 SGMS2Q8NHU3 365 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 GUCD1Q96NT3 240 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 SLC17A4Q9Y2C5 497 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 FGF17O60258 216 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 FOLR2P14207 255 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 IL9P15248 144 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 ST6GAL1P15907 406 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 HIST1H1DP16402 221 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 HOXA6P31267 233 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 CRYBB2P43320 205 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 ROM1Q03395 351 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 MRPL58Q14197 206 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 RPS19BP1Q86WX3 136 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 ANKRD10Q9NXR5 420 aa7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-218ENST00000513024 A0A1B0GX78 115 aa7.76□□□□□ -1.17
LIMCH1-218ENST00000513024 DHRS7CA6NNS2 312 aa7.76□□□□□ -1.17
LIMCH1-218ENST00000513024 SLC17A2O00624 439 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms