RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SAXO2Q658L1 398 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 Q6ZSR6 202 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 SMIM15Q7Z3B0 74 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 TMED4Q7Z7H5 227 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 COMMD7Q86VX2 200 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 TEX47Q8TBZ9 253 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 FAM172AQ8WUF8 416 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 PPCDCQ96CD2 204 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 TMA16Q96EY4 203 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 PHB2Q99623 299 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 DOK1Q99704 481 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 HSD17B10Q99714 261 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 PRRT1Q99946 306 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 TMEM243Q9BU79 118 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 MRPL20Q9BYC9 149 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 KRTAP4-3Q9BYR4 195 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 FBXL15Q9H469 300 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 METTL17Q9H7H0 456 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 VPS29Q9UBQ0 182 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 RAB26Q9ULW5 256 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 ALG5Q9Y673 324 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 A0A1W2PP64 1363 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 FLT4P35916 1363 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 MN1Q10571 1320 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 IGHV3-74A0A0B4J1X5 117 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 TMEM238C9JI98 176 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 FADS1O60427 444 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 CNMDO75829 334 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 MT-ND4P03905 459 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 IGKV3-11P04433 115 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 IGHV4-34P06331 123 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 LINC00614P0C842 121 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 ME2P23368 584 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 AGTR1P30556 359 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 PRSS3P35030 304 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 SSTR5P35346 364 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 ACOT2P49753 483 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 RANP62826 216 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 RPL23P62829 140 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 GTF2BQ00403 316 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 XKRXQ6PP77 449 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 OPN5Q6U736 354 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 GID4Q8IVV7 300 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 ITPRIPQ8IWB1 547 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 PXT1Q8NFP0 134 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 OR4C13Q8NGP0 309 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 TIMM17AQ99595 171 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 TLNRD1Q9H1K6 362 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 OR51E2Q9H255 320 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 POMKQ9H5K3 350 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 RBFOX1Q9NWB1 397 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 GLTPQ9NZD2 209 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 CACNG2Q9Y698 323 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 WDR62O43379 1518 aa3.54□□□□□ -1.84
CCDC88A-206ENST00000430086 NACAE9PAV3 2078 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 EIF3AQ14152 1382 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 ADAMTSL3P82987 1691 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 PGPA6NDG6 321 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 FAM183AA6NL82 134 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 KRTAP4-16G5E9R7 235 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 PDCD6O75340 191 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 CIAO1O76071 339 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC25A14O95258 325 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 ALOX5APP20292 161 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 PRTN3P24158 256 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 ADORA1P30542 326 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 CCR7P32248 378 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 PMELP40967 661 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC35A2P78381 396 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 OR2F1Q13607 317 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 IRF4Q15306 451 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 FBXL19-AS1Q494R0 122 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 CYB5R2Q6BCY4 276 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 NPBQ8NG41 125 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 OR10G4Q8NGN3 311 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 MFSD8Q8NHS3 518 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC37A2Q8TED4 501 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 RDH5Q92781 318 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 PECRQ9BY49 303 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 MROQ9BYG7 248 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 DEC1Q9P2X7 70 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 GLS2Q9UI32 602 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 KLK12Q9UKR0 248 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 PSG8Q9UQ74 426 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 TRAPPC4Q9Y296 219 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 POLR1DQ9Y2S0 133 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 INSIG2Q9Y5U4 225 aa3.53□□□□□ -1.84
CCDC88A-206ENST00000430086 ROCK1Q13464 1354 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 CLDN24A6NM45 220 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF705GA8MUZ8 300 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 PSMD12O00232 456 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 MFNGO00587 321 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 DHRS3O75911 302 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 INSP01308 110 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 CRISP2P16562 243 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 OMGP23515 440 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 TAS2R43P59537 309 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 CRADDP78560 199 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 RPL19P84098 196 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms