RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HOGA1Q86XE5 327 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 SLC38A6Q8IZM9 456 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 TCTEX1D2Q8WW35 142 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 OR5P3Q8WZ94 311 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 PLPPR2Q96GM1 343 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF75AQ96N20 296 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 KCNK7Q9Y2U2 307 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 ESPL1Q14674 2120 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 PTPRQQ9UMZ3 2332 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 GPR137BO60478 399 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 OR4A8P0C604 315 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 OR8U9P0C7N5 309 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 GPR12P47775 334 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ERVS71-1P61550 626 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 CCL8P80075 99 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 PSG7Q13046 419 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 IQCF2Q8IXL9 164 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF808Q8N4W9 903 aaPredicted RBP9.95□□□□□ -0.82
VPS4A-201ENST00000254950 SUMF2Q8NBJ7 301 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 OR52B4Q8NGK2 314 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 OR8U1Q8NH10 309 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ITLN1Q8WWA0 313 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 Q96M66 194 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 NUDT16L1Q9BRJ7 211 aaKnown RBP9.95□□□□□ -0.82
VPS4A-201ENST00000254950 NCOR2Q9Y618 2525 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 TMEM8BA6NDV4 472 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 GPR31O00270 319 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ICMTO60725 284 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 IFNA5P01569 189 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ZBTB25P24278 435 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 RFESDQ8TAC1 157 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 SCGB1C1Q8TD33 95 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 WBP1Q96G27 269 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 KIF25Q9UIL4 384 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ZDHHC8Q9ULC8 765 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 DOCK10Q96BY6 2186 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 RFPL4AA6NLU0 287 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 A8MXE2 369 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 RFPL4AL1F8VTS6 287 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 ADAM20O43506 726 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 POM121Q96HA1 1249 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 MED30Q96HR3 178 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 CITED4Q96RK1 184 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 CISD1Q9NZ45 108 aaKnown RBP9.95□□□□□ -0.82
VPS4A-201ENST00000254950 OR6C3Q9NZP0 311 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 NUP50Q9UKX7 468 aa9.95□□□□□ -0.82
VPS4A-201ENST00000254950 TRDCB7Z8K6 153 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 HEXAP06865 529 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 OR3A1P47881 315 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 RPL23AP62750 156 aaKnown RBP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF826PQ6ZT77 177 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 DMBX1Q8NFW5 382 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 RAB1CQ92928 201 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 FAM234AQ9H0X4 552 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 TREM2Q9NZC2 230 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 HSF4Q9ULV5 492 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 NPTNQ9Y639 398 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 IGKV1-9A0A0C4DH69 117 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 C1QBP02746 253 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 C1QL2Q7Z5L3 287 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 OR13C8Q8NGS7 320 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 AQP3Q92482 292 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 S1PR3Q99500 378 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 HDHD3Q9BSH5 251 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 UBQLN2Q9UHD9 624 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 HEATR1Q9H583 2144 aaKnown RBP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 H7C2Y5 167 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 ADAM10O14672 748 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 SERPINF1P36955 418 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 MECP2P51608 486 aaKnown RBP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 IL24Q13007 206 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 UNC119Q13432 240 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 SURF2Q15527 256 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 PLA1AQ53H76 456 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 STX12Q86Y82 276 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF709Q8N972 641 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 MRGPRDQ8TDS7 321 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 ST8SIA4Q92187 359 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 FBXW5Q969U6 566 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 SUCNR1Q9BXA5 334 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 CA10Q9NS85 328 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 LIN7CQ9NUP9 197 aaKnown RBP9.94□□□□□ -0.82
VPS4A-201ENST00000254950 WIPI2Q9Y4P8 454 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 POLEQ07864 2286 aa9.94□□□□□ -0.82
VPS4A-201ENST00000254950 hADV38S2A0JD32 116 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 C1QTNF9BB2RNN3 333 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 PPIHO43447 177 aaKnown RBP9.93□□□□□ -0.82
VPS4A-201ENST00000254950 C1QTNF9P0C862 333 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 NPBWR2P48146 333 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 DHRS2Q13268 280 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 C1QTNF12Q5T7M4 302 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 LINC01560Q8TB33 94 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 DYRK2Q92630 601 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 RNASE6Q93091 150 aaKnown RBP9.93□□□□□ -0.82
VPS4A-201ENST00000254950 SULT4A1Q9BR01 284 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 TMPRSS13Q9BYE2 586 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 RNF150Q9ULK6 438 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 ZSCAN5BA6NJL1 495 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF205O95201 554 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms