RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HSPA12AO43301 675 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 PATE4P0C8F1 98 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 AADACP22760 399 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 WNT5AP41221 380 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 HERV-K104P61576 105 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 NUTF2P61970 127 aaKnown RBP12.48□□□□□ -0.41
SDC1-201ENST00000254351 ZNF266Q14584 549 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 CLDND2Q8NHS1 167 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 SNHG12Q9BXW3 62 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 P4HTMQ9NXG6 502 aa12.48□□□□□ -0.41
SDC1-201ENST00000254351 ELOA3CA0A087WX78 387 aaPredicted RBP12.47□□□□□ -0.41
SDC1-201ENST00000254351 VSTM2BA6NLU5 285 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 CLDN34H7C241 214 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 LINC01565O15544 149 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 EFNA2O43921 213 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 TSPAN2O60636 221 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 IGKV3-11P04433 115 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 DOK3Q7L591 496 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 MSI2Q96DH6 328 aaKnown RBP12.47□□□□□ -0.41
SDC1-201ENST00000254351 RBM24Q9BX46 236 aaKnown RBP12.47□□□□□ -0.41
SDC1-201ENST00000254351 CUTCQ9NTM9 273 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 KIAA1456Q9P272 454 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 ANAPC10Q9UM13 185 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 CHST1O43916 411 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 IL18BPO95998 194 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 MBP02144 154 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 ARL4DP49703 201 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 RPS16P62249 146 aaKnown RBP12.47□□□□□ -0.41
SDC1-201ENST00000254351 CRIP3Q6Q6R5 217 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 BTNL3Q6UXE8 466 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 ZNF705AQ6ZN79 300 aaPredicted RBP12.47□□□□□ -0.41
SDC1-201ENST00000254351 FAM185AQ8N0U4 392 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 KDF1Q8NAX2 398 aaPredicted RBP12.47□□□□□ -0.41
SDC1-201ENST00000254351 C2orf88Q9BSF0 95 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 ZNF442Q9H7R0 627 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 TMED3Q9Y3Q3 217 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 C2orf16Q68DN1 1984 aa12.47□□□□□ -0.41
SDC1-201ENST00000254351 FOSL2P15408 326 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 RNF4P78317 190 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 RTL6Q6ICC9 239 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 TMEM92Q6UXU6 159 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 CALHM1Q8IU99 346 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 FUT9Q9Y231 359 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 TCRBV21S2A2A0A5A6 115 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 MAS1LP35410 378 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 SUCLG1P53597 346 aaKnown RBP12.46□□□□□ -0.41
SDC1-201ENST00000254351 SNAI3Q3KNW1 292 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 FAM89BQ8N5H3 189 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 B3GAT1Q9P2W7 334 aa12.46□□□□□ -0.41
SDC1-201ENST00000254351 OR7C1O76099 320 aaPredicted RBP12.46□□□□□ -0.42
SDC1-201ENST00000254351 IGHG1P01857 330 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 LMO1P25800 156 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 IL13RA2Q14627 380 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 SLC10A1Q14973 349 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 TCEAL6Q6IPX3 200 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 PCGF1Q9BSM1 259 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 NDUFAF3Q9BU61 184 aa12.46□□□□□ -0.42
SDC1-201ENST00000254351 C3orf85A0A1B0GTC6 90 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 GUCA1AP43080 201 aaPredicted RBP12.45□□□□□ -0.42
SDC1-201ENST00000254351 GNB2P62879 340 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 JOSD1Q15040 202 aaPredicted RBP12.45□□□□□ -0.42
SDC1-201ENST00000254351 CST9LP1Q5W188 147 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 TMEM234Q8WY98 164 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 DCAF16Q9NXF7 216 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 PLEK2Q9NYT0 353 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 IAPPP10997 89 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 DEFB133Q30KQ1 61 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 TEX38Q6PEX7 206 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 SSX7Q7RTT5 188 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 C18orf12Q96KH6 178 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 FBLN5Q9UBX5 448 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 PITPNC1Q9UKF7 332 aa12.45□□□□□ -0.42
SDC1-201ENST00000254351 MUC22E2RYF6 1773 aaPredicted RBP12.45□□□□□ -0.42
SDC1-201ENST00000254351 H3F3AP84243 136 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 PAX5Q02548 391 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 PRAMEF20Q5VT98 475 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 ZNF787Q6DD87 383 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 OR10A7Q8NGE5 316 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 DDIT4LQ96D03 193 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 RPRMQ9NS64 109 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 TP53TG5Q9Y2B4 290 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 KIR2DS5A0A0G2JLQ3 304 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 A0A0G2JNG1 304 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 LIPT2A6NK58 231 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 ZNF705FA8MVS1 300 aaPredicted RBP12.44□□□□□ -0.42
SDC1-201ENST00000254351 KIR2DS3K7RE56 304 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 NPSP0C0P6 89 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 ZNF705DP0CH99 300 aaPredicted RBP12.44□□□□□ -0.42
SDC1-201ENST00000254351 ZNF705BP0CI00 300 aaPredicted RBP12.44□□□□□ -0.42
SDC1-201ENST00000254351 DEFA4P12838 97 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 TLE4Q04727 773 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 KIR2DS5Q14953 304 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 TMEM183AQ8IXX5 376 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 OR1P1Q8NH06 330 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 CLEC1BQ9P126 229 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 MMACHCQ9Y4U1 282 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 TMEM265A0A087WTH1 108 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 FAM90A2PQ658T7 463 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 C16orf82Q7Z2V1 217 aa12.44□□□□□ -0.42
SDC1-201ENST00000254351 TBC1D26Q86UD7 250 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms