RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PRDM13Q9H4Q3 707 aa15.06■□□□□ 0
CLN3-259ENST00000637551 NCOR1P1Q9H4R4 102 aa15.06■□□□□ 0
CLN3-259ENST00000637551 EXOSC4Q9NPD3 245 aaKnown RBP15.06■□□□□ 0
CLN3-259ENST00000637551 ACOT13Q9NPJ3 140 aa15.06■□□□□ 0
CLN3-259ENST00000637551 OR14J1Q9UGF5 321 aa15.06■□□□□ 0
CLN3-259ENST00000637551 MGST3O14880 152 aa15.05■□□□□ -0
CLN3-259ENST00000637551 ARL6IP5O75915 188 aa15.05■□□□□ -0
CLN3-259ENST00000637551 UCHL1P09936 223 aa15.05■□□□□ -0
CLN3-259ENST00000637551 CD37P11049 281 aa15.05■□□□□ -0
CLN3-259ENST00000637551 SELLP14151 372 aa15.05■□□□□ -0
CLN3-259ENST00000637551 CAPZA1P52907 286 aa15.05■□□□□ -0
CLN3-259ENST00000637551 HILS1P60008 231 aa15.05■□□□□ -0
CLN3-259ENST00000637551 ACSM3Q53FZ2 586 aa15.05■□□□□ -0
CLN3-259ENST00000637551 GDPD3Q7L5L3 318 aa15.05■□□□□ -0
CLN3-259ENST00000637551 LYPD6Q86Y78 171 aa15.05■□□□□ -0
CLN3-259ENST00000637551 BPIFB2Q8N4F0 458 aa15.05■□□□□ -0
CLN3-259ENST00000637551 ASCC1Q8N9N2 400 aaKnown RBP15.05■□□□□ -0
CLN3-259ENST00000637551 H1FXQ92522 213 aaKnown RBP15.05■□□□□ -0
CLN3-259ENST00000637551 SPACA5Q96QH8 159 aa15.05■□□□□ -0
CLN3-259ENST00000637551 TBX15Q96SF7 602 aa15.05■□□□□ -0
CLN3-259ENST00000637551 S100A13Q99584 98 aa15.05■□□□□ -0
CLN3-259ENST00000637551 METTL9Q9H1A3 318 aa15.05■□□□□ -0
CLN3-259ENST00000637551 TRAV8-7A0A075B6U6 113 aa15.04■□□□□ -0
CLN3-259ENST00000637551 TRAV40A0A0B4J280 105 aa15.04■□□□□ -0
CLN3-259ENST00000637551 A0A1W2PQ09 198 aa15.04■□□□□ -0
CLN3-259ENST00000637551 ANGPTL7O43827 346 aa15.04■□□□□ -0
CLN3-259ENST00000637551 UBBP0CG47 229 aa15.04■□□□□ -0
CLN3-259ENST00000637551 PRTN3P24158 256 aa15.04■□□□□ -0
CLN3-259ENST00000637551 RSU1Q15404 277 aa15.04■□□□□ -0
CLN3-259ENST00000637551 UBE2UQ5VVX9 321 aa15.04■□□□□ -0
CLN3-259ENST00000637551 LIPKQ5VXJ0 399 aa15.04■□□□□ -0
CLN3-259ENST00000637551 C17orf107Q6ZR85 190 aa15.04■□□□□ -0
CLN3-259ENST00000637551 OR5D18Q8NGL1 313 aa15.04■□□□□ -0
CLN3-259ENST00000637551 RFT1Q96AA3 541 aa15.04■□□□□ -0
CLN3-259ENST00000637551 TCF7L1Q9HCS4 588 aa15.04■□□□□ -0
CLN3-259ENST00000637551 NOX4Q9NPH5 578 aa15.04■□□□□ -0
CLN3-259ENST00000637551 LINC00312Q9Y6C7 94 aa15.04■□□□□ -0
CLN3-259ENST00000637551 PNMA8CA0A1B0GUJ8 204 aa15.03■□□□□ -0
CLN3-259ENST00000637551 hADV38S2A0JD32 116 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A10PA6NDY2 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A18PA6NE21 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A16PA6NEW6 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A20PA6NIJ5 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A8PA6NJQ4 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A7PA6NKC0 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A22PA8MWA6 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A12PA8MX19 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A5PA8MXJ8 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A23PA8MXZ1 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 CLDN34H7C241 214 aa15.03■□□□□ -0
CLN3-259ENST00000637551 PIN1P1O15428 100 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A15PP0C7V4 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A13PP0C7W8 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A14PP0C7W9 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 FAM90A24PP0C7X0 464 aa15.03■□□□□ -0
CLN3-259ENST00000637551 EMX1Q04741 257 aaPredicted RBP15.03■□□□□ -0
CLN3-259ENST00000637551 MPV17LQ2QL34 196 aa15.03■□□□□ -0
CLN3-259ENST00000637551 HSD17B12Q53GQ0 312 aa15.03■□□□□ -0
CLN3-259ENST00000637551 CD200R1LQ6Q8B3 271 aa15.03■□□□□ -0
CLN3-259ENST00000637551 MS4A7Q9GZW8 240 aaPredicted RBP15.03■□□□□ -0
CLN3-259ENST00000637551 SLITRK2Q9H156 845 aa15.03■□□□□ -0
CLN3-259ENST00000637551 NDUFB11Q9NX14 153 aa15.03■□□□□ -0
CLN3-259ENST00000637551 RGS9O75916 674 aaPredicted RBP15.02■□□□□ -0
CLN3-259ENST00000637551 OR2H2O95918 312 aa15.02■□□□□ -0
CLN3-259ENST00000637551 CSTBP04080 98 aaKnown RBP15.02■□□□□ -0
CLN3-259ENST00000637551 HSMCR30P0CW71 290 aa15.02■□□□□ -0
CLN3-259ENST00000637551 PSMD7P51665 324 aa15.02■□□□□ -0
CLN3-259ENST00000637551 ARF6P62330 175 aa15.02■□□□□ -0
CLN3-259ENST00000637551 GLT8D1Q68CQ7 371 aa15.02■□□□□ -0
CLN3-259ENST00000637551 ZNF773Q6PK81 442 aa15.02■□□□□ -0
CLN3-259ENST00000637551 RBMS3Q6XE24 437 aaKnown RBP15.02■□□□□ -0
CLN3-259ENST00000637551 SATL1Q86VE3 508 aa15.02■□□□□ -0
CLN3-259ENST00000637551 PCGF1Q9BSM1 259 aa15.02■□□□□ -0
CLN3-259ENST00000637551 TMED9Q9BVK6 235 aa15.02■□□□□ -0
CLN3-259ENST00000637551 SPACA1Q9HBV2 294 aa15.02■□□□□ -0
CLN3-259ENST00000637551 ONECUT1Q9UBC0 465 aa15.02■□□□□ -0
CLN3-259ENST00000637551 GSTK1Q9Y2Q3 226 aa15.02■□□□□ -0
CLN3-259ENST00000637551 SF3B6Q9Y3B4 125 aaKnown RBP15.02■□□□□ -0
CLN3-259ENST00000637551 IGHV1-69DA0A0B4J2H0 117 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 CENPVL3A0A0U1RRI6 287 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 TMEM82A0PJX8 343 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 IGHV1-69P01742 117 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 IGHV4-38-2P0DP08 117 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 GTF2F2P13984 249 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 SRMP19623 302 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 OR3A1P47881 315 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 OR3A4PP47883 348 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 CEBPDP49716 269 aaPredicted RBP15.01□□□□□ -0.01
CLN3-259ENST00000637551 UBE2E1P51965 193 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 RBM11P57052 281 aaKnown RBP15.01□□□□□ -0.01
CLN3-259ENST00000637551 GRK1Q15835 563 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 Q6P435 159 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 VMO1Q7Z5L0 202 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 SPARTQ8N0X7 666 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 OSR2Q8N2R0 312 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 FGFRL1Q8N441 504 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 Q8N7P7 452 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 TNFRSF14Q92956 283 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 FAM192AQ9GZU8 254 aa15.01□□□□□ -0.01
CLN3-259ENST00000637551 C19orf12Q9NSK7 152 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms