RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 GPR50Q13585 617 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 TPBGQ13641 420 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 EDDM3AQ14507 147 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 ZNF273Q14593 569 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 RSU1Q15404 277 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 TUSC1Q2TAM9 212 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 KRTAP24-1Q3LI83 254 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 Q6P435 159 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 ASCL4Q6XD76 172 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 CMTM4Q8IZR5 234 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 OR8H2Q8N162 312 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 MS4A15Q8N5U1 240 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 TPRX1Q8N7U7 411 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 DMRTB1Q96MA1 342 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 NR1H4Q96RI1 486 aaPredicted RBP12.49□□□□□ -0.41
LIG1-219ENST00000600055 SUCNR1Q9BXA5 334 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 PPIL3Q9H2H8 161 aaKnown RBP12.49□□□□□ -0.41
LIG1-219ENST00000600055 RHOFQ9HBH0 211 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 ISYNA1Q9NPH2 558 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 ESM1Q9NQ30 184 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 GLS2Q9UI32 602 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 RNF212BA8MTL3 300 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 M0R1W7 72 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 HTR3BO95264 441 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 ZNF44P15621 663 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 CCL3L1P16619 93 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 MAPK3P27361 379 aaPredicted RBP12.48□□□□□ -0.41
LIG1-219ENST00000600055 OR3A1P47881 315 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 MTNR1BP49286 362 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 HILS1P60008 231 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 GABARAPL2P60520 117 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 MLLT11Q13015 90 aaPredicted RBP12.48□□□□□ -0.41
LIG1-219ENST00000600055 TBCEQ15813 527 aaPredicted RBP12.48□□□□□ -0.41
LIG1-219ENST00000600055 GRK1Q15835 563 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 ELP2Q6IA86 826 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 C9orf139Q6ZV77 190 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 USP43Q70EL4 1123 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 GDPD3Q7L5L3 318 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 CEACAM19Q7Z692 300 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 JAGN1Q8N5M9 183 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 TNFRSF14Q92956 283 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 MGLLQ99685 303 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 ACOT13Q9NPJ3 140 aa12.48□□□□□ -0.41
LIG1-219ENST00000600055 A0A0A6YYJ9 748 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 IGHV1-69DA0A0B4J2H0 117 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 A0A1W2PRD5 423 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 A0A1W2PRF3 423 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 A0A1W2PRM7 423 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 RNASEK-C17orf49H0YIS7 233 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 DEGS1O15121 323 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 MRPS14O60783 128 aaKnown RBP12.47□□□□□ -0.41
LIG1-219ENST00000600055 SC5DO75845 299 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 IGHV1-69P01742 117 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 CPEP16870 476 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 EMX1Q04741 257 aaPredicted RBP12.47□□□□□ -0.41
LIG1-219ENST00000600055 DEFB112Q30KQ8 113 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 PIGYQ3MUY2 71 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 TMEM91Q6ZNR0 172 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 TCF23Q7RTU1 214 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 ZNF367Q7RTV3 350 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 PHC2Q8IXK0 858 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 PNKDQ8N490 385 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 C11orf42Q8N5U0 333 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 ZDHHC22Q8N966 263 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 Q8NFD4 153 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 OR5D13Q8NGL4 314 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 THRSPQ92748 146 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 MUL1Q969V5 352 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 METTL9Q9H1A3 318 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 ZNF581Q9P0T4 197 aa12.47□□□□□ -0.41
LIG1-219ENST00000600055 SF3B6Q9Y3B4 125 aaKnown RBP12.47□□□□□ -0.41
LIG1-219ENST00000600055 A0A0G2JK05 382 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 A0A1W2PP11 408 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 SLC33A1O00400 549 aaPredicted RBP12.46□□□□□ -0.41
LIG1-219ENST00000600055 SERPINA2P20848 420 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 PRTN3P24158 256 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 LMO1P25800 156 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 BMXP51813 675 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 DLX6P56179 175 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 BLMHQ13867 455 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 HCP5Q6MZN7 132 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 C1orf122Q6ZSJ8 110 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 LRRTM1Q86UE6 522 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 LYPD6Q86Y78 171 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 SPARTQ8N0X7 666 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 PIP4P2Q8N4L2 257 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 OR4D6Q8NGJ1 314 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 TMEM158Q8WZ71 300 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 DUX5Q96PT3 197 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 PPA2Q9H2U2 334 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 METTL8Q9H825 291 aaKnown RBP12.46□□□□□ -0.41
LIG1-219ENST00000600055 ING3Q9NXR8 418 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 IL36GQ9NZH8 169 aa12.46□□□□□ -0.41
LIG1-219ENST00000600055 MRPS28Q9Y2Q9 187 aaKnown RBP12.46□□□□□ -0.41
LIG1-219ENST00000600055 HSPB6O14558 160 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 MGST3O14880 152 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 UCHL1P09936 223 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 BPIFB3P59826 476 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 SSX1Q16384 188 aa12.45□□□□□ -0.42
LIG1-219ENST00000600055 SLC22A6Q4U2R8 563 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms